ChickenSD / RefSNPs / ggaS11663135
Detail information of ggaS11663135
1.General Information
Reference SNP ID: | ggaS11663135 |
Chromosome: | chr3 |
Position: | 45 |
RefSNP Alleles | A/G |
NCBI ss link |
2.Gene information
Var ID | Gene ID | Transcript ID | Gene Symbol | Variant Effect | Biotype | cDNA Position | Allele Change | Protein ID | Protein Position | Residue Change |
---|---|---|---|---|---|---|---|---|---|---|
ggaS11663135 | - | - | intergenic_variant | - | 0 | - => - | - | 0 | - => - |
3.Individual Genotype
Individual | Genotype |
---|---|
101S_L1_I028 | A |
102S_L3_I037 | A |
103S | A |
106S_L6_I030 | A |
107S_L2_I031 | A |
108S_L6_I032 | A |
10S_L1_I052 | A |
112S_L3_I035 | A |
113S_L1_I036 | A |
114S_L3_I037 | A |
118S_L4_I040 | A |
119S_L3_I041 | A |
11S | A |
124S_L2_I048 | A |
125S_L3_I050 | A |
126S_L3_I051 | A |
128S_L1_I042 | A |
130S_L4_I044 | A |
132S_L2_I046 | A |
133S_L8_I046 | A |
134S_L2_I047 | A |
135S_L3_I048 | A |
14S_L2_I021 | A |
17S_L3_I024 | A |
18833 | A |
19297 | A |
19912 | A |
1S | A |
20736 | A |
24S_L4_I031 | A |
26S | A |
29S_L3_I036 | A |
2S | A |
30S_L2_I037 | A |
35S_L5_I041 | A |
36S_L5_I042 | A |
37S_L2_I043 | A |
38S_L6_I044 | A |
39S_L6_I053 | A |
3S_L4_I003 | A |
40S_L2_I054 | A |
43S | A |
44S_L4_I001 | A |
45S_L2_I002 | A |
46S_L4_I003 | A |
47S_L3_I046 | A |
4S_L4_I004 | A |
50S_L1_I047 | A |
52S_L2_I050 | A |
53S_L2_I006 | A |
54S_L2_I007 | A |
55S_L1_I008 | A |
56S_L1_I010 | A |
58S_L4_I051 | A |
59S_L5_I052 | A |
63S_L5_I056 | A |
66S_L2_I003 | A |
67S_L1_I011 | A |
68S_L3_I012 | A |
69S | A |
71S_L3_I023 | A |
73S_L1_I025 | A |
74S_L4_I026 | A |
75S_L3_I027 | A |
76S_L1_I028 | A |
77S_L4_I029 | A |
78S_L4_I030 | A |
7S_L4_I007 | A |
80S_L3_I004 | A |
81S_L1_I005 | A |
82S | A |
84S_L5_I006 | A |
90S_L4_I021 | A |
93S_L7_I024 | A |
95S_L8_I025 | A |
96S_L4_I026 | A |
98S_L3_I034 | A |
99S_L2_I035 | A |
9S | A |
A1 | A |
A10 | A |
A12 | A |
A14 | A |
A3 | A |
A8 | A |
BKL2 | A |
BLB1_L2_I007 | A |
BLO1 | A |
BLO3_L4_I022 | A |
BOJA2 | A |
BYW5_L2_I010 | A |
GVF | A |
India11 | A |
India13 | A |
India15 | G |
India19 | A |
India27 | A |
India29 | A |
India31 | A |
India33 | R |
India41 | A |
India45 | A |
India5 | A |
India55 | A |
India61 | A |
India7 | A |
India9 | A |
L2 | R |
N13 | A |
N18 | A |
N3 | G |
N5 | A |
N7 | A |
S-f1_L4_I106 | A |
S-f2_I107 | R |
S-f4_L4_I109 | A |
S-m1_I101 | A |
S-m2_I102 | A |
S-m4_L2_I104 | A |
SAMN02486156 | A |
SAMN02486157 | A |
SAMN02486158 | A |
SAMN02486159 | A |
SAMN02486160 | A |
SAMN02486161 | A |
SAMN02486164 | G |
SAMN02486165 | A |
SAMN02486166 | A |
SAMN02486167 | A |
Silkia | A |
T2 | A |
T3 | A |
T5 | A |
TD1 | A |
TD12 | R |
TD15 | A |
TD22 | A |
TD6 | A |
TD9 | A |
Tibet | A |
Xcelris_105 | A |
Xcelris_10A | A |
Xcelris_10B | A |
Xcelris_112 | A |
Xcelris_11B | A |
Xcelris_120 | A |
Xcelris_127 | A |
Xcelris_128 | A |
Xcelris_12A | A |
Xcelris_13 | A |
Xcelris_137 | A |
Xcelris_174 | A |
Xcelris_175 | A |
Xcelris_176 | A |
Xcelris_1A | A |
Xcelris_1B | A |
Xcelris_219 | A |
Xcelris_222 | A |
Xcelris_224 | A |
Xcelris_226 | A |
Xcelris_227 | A |
Xcelris_278 | A |
Xcelris_331 | A |
Xcelris_335 | A |
Xcelris_340 | A |
Xcelris_36 | A |
Xcelris_379 | A |
Xcelris_380 | A |
Xcelris_382 | A |
Xcelris_383 | A |
Xcelris_384 | A |
Xcelris_385 | A |
Xcelris_394 | A |
Xcelris_44 | A |
Xcelris_5A | A |
Xcelris_5B | R |
Xcelris_6A | A |
Xcelris_6B | A |
Xcelris_84 | G |
Xcelris_8A | A |
Xcelris_MT-134 | A |
Xcelris_MT-18 | A |
Xcelris_MT-6 | A |
Y1-f1_L5_I119 | A |
Y1-f3_L7_I101 | A |
Y1-m2_L4_I122 | A |
Y1-m3_L7_I123 | A |
Y1-m4_I124 | A |
Y1-m5_L7_I102 | A |
YPt601 | A |
YPt610 | A |
YPt641 | A |
You1 | A |
You3_L7_I1000005 | A |
Ypt567 | A |
Ypt568 | A |
Ypt569 | A |
Ypt571 | A |
Ypt572 | A |
Ypt573 | A |
Ypt574 | A |
Ypt576 | A |
Ypt578 | A |
Ypt579 | A |
Ypt580 | A |
Ypt581 | A |
Ypt583 | A |
Ypt584 | A |
Ypt586 | A |
Ypt587 | A |
Ypt588 | A |
Ypt589 | A |
Ypt590 | A |
Ypt591 | A |
Ypt593 | A |
Ypt594 | A |
Ypt596 | A |
Ypt597 | A |
Ypt598 | A |
Ypt599 | A |
Ypt600 | A |
Ypt603 | A |
Ypt606 | A |
Ypt608 | A |
Ypt622 | A |
Ypt623 | A |
Ypt624 | A |
Ypt626 | A |
Ypt640 | A |
Ypt642 | A |
Ypt643 | A |
Ypt645 | A |
Ypt646 | A |
Ypt647 | A |
Yt516 | A |
Yt517 | A |
Yt518 | A |
Yt519 | A |
Yt520 | A |
Yt521 | R |
Yt522 | A |
Yt523 | A |
Yt524 | A |
Yt525 | A |
Yt526 | A |
Yt527 | A |
Yt528 | R |
Yt529 | A |
Yt530 | A |
Yt536 | A |
Yt538 | R |
Yt539 | A |
Yt540 | A |
ZJ2 | A |
ZJ4 | A |
india3 | A |
india49 | A |
production | A |
ypt171_L2_I021 | A |
ypt175_L2_I023 | A |
ypt2043_L1_I037 | A |
ypt2051_L3_I003 | G |
ypt2053_L6_I004 | A |
ypt2063_L6_I005 | G |
ypt2069_L6_I006 | A |
ypt2071_L1_I038 | A |
ypt2082 | A |
ypt2086 | A |
ypt2087 | A |
ypt2093 | A |
ypt2094 | A |
ypt2095 | A |
ypt2098 | A |
ypt2100 | A |
ypt2101 | A |
ypt2102 | A |
ypt2103 | A |
ypt2106 | A |
ypt2107 | A |
ypt2108 | A |
ypt2109 | A |
ypt2112 | A |
ypt2114 | A |
ypt2115 | A |
ypt2118 | A |
ypt2119 | A |
ypt2126_L3_I053 | A |
ypt2163 | A |
ypt2164 | A |
ypt2165 | A |
ypt2167 | A |
ypt2168 | A |
ypt2169 | A |
ypt2170 | A |
ypt2174 | A |
ypt2176 | A |
ypt2177 | A |
ypt2178 | A |
ypt2184 | A |
ypt2185 | A |
ypt2186 | A |
ypt2187 | A |
ypt2189 | A |
ypt2190 | A |
ypt2191 | A |
ypt2200 | A |
ypt2209 | A |
ypt2215 | A |
ypt2216 | A |
ypt2218 | A |
ypt2219 | A |
ypt2220 | A |
ypt2221 | A |
ypt2222 | A |
ypt2438 | A |
ypt2439 | A |
ypt2440 | A |
ypt2442 | A |
ypt2445 | A |
ypt2446 | A |
ypt2447 | A |
ypt2454 | A |
ypt2459 | A |
ypt2468 | A |
ypt2500 | A |
ypt2503 | A |
ypt2504 | A |
ypt2512 | A |
ypt2523 | A |
ypt2541 | A |
ypt2543 | A |
ypt2544 | A |
ypt2545 | A |
ypt2547 | A |
ypt2563 | A |
ypt2569 | A |
ypt2571 | A |
ypt2572 | A |
ypt2574 | A |
ypt2575 | A |
ypt2601 | A |
ypt2608 | A |
ypt2623 | A |
ypt2624 | A |
ypt2625 | A |
ypt262_L3_I030 | A |
ypt2630 | A |
ypt2636 | A |
ypt2638 | A |
ypt263_L3_I031 | A |
ypt2640 | A |
ypt2641 | A |
ypt2646 | A |
ypt264_L3_I032 | A |
ypt2650 | A |
ypt2653 | A |
ypt2656 | A |
ypt2661 | A |
ypt2664 | A |
ypt2669 | A |
ypt2670 | A |
ypt2671 | A |
ypt2672 | A |
ypt2673 | A |
ypt2706 | A |
ypt2722 | A |
ypt2740 | A |
ypt2760 | A |
ypt2761 | A |
ypt2765 | A |
ypt2766 | A |
ypt2781 | A |
ypt2783 | A |
ypt2784 | A |
ypt2785 | A |
ypt2786 | A |
ypt2787 | A |
ypt2788 | A |
ypt2790 | A |
ypt2791 | A |
ypt2792 | A |
ypt2799 | A |
ypt2808 | A |
ypt2816 | A |
ypt2821 | A |
ypt2822 | A |
ypt2823 | A |
ypt2825 | A |
ypt2826 | A |
ypt2827 | A |
ypt2828 | A |
ypt2831 | A |
ypt2832 | A |
ypt2842 | A |
ypt2843 | A |
ypt2849 | A |
ypt2859 | A |
ypt2860 | A |
ypt2862 | A |
ypt2887 | A |
ypt2888 | A |
ypt2890_L3_I040 | A |
ypt2891_L3_I041 | A |
ypt2893_L3_I025 | A |
ypt2894 | A |
ypt2895_L3_I026 | G |
ypt2909 | A |
ypt2918 | A |
ypt2929 | A |
ypt2930 | A |
ypt3001 | R |
ypt3005 | A |
ypt3007 | A |
ypt3009 | A |
ypt3011 | A |
ypt3017 | A |
ypt3028 | A |
ypt3038 | A |
ypt3040 | R |
ypt3043 | A |
ypt3044 | A |
ypt3045 | G |
ypt3046 | A |
ypt3047 | A |
ypt3051 | A |
ypt3052 | R |
ypt3069 | A |
ypt3072 | A |
ypt3133 | A |
ypt3135 | A |
ypt3138 | A |
ypt3139 | A |
ypt3140 | A |
ypt3141 | A |
ypt3142 | A |
ypt3143 | A |
ypt3146 | G |
ypt3149_L2_I034 | A |
ypt3150_L8_I023 | A |
ypt3159_L6_I035 | A |
ypt3160_L8_I024 | A |
ypt3162_L6_I036 | A |
ypt3179_L8_I025 | A |
ypt3180 | A |
ypt3181_L7_I038 | A |
ypt3182_L1_I039 | R |
ypt3189_L1_I040 | A |
ypt3190_L8_I026 | A |
ypt3195_L1_I042 | A |
ypt3196_L2_I043 | A |
ypt3197_L1_I044 | A |
ypt3206_L1_I048 | A |
ypt3207_L6_I050 | A |
ypt3210_L6_I051 | A |
ypt3211_L6_I052 | A |
ypt3219_L1_I030 | A |
ypt3221_L1_I032 | A |
ypt3222_L1_I033 | A |
ypt3224_L8_I043 | A |
ypt3226_L3_I044 | A |
ypt3228-7_L1_I034 | A |
ypt3229_L8_I045 | A |
ypt3257_L1_I056 | A |
ypt3258_L3_I001 | A |
ypt3259_L6_I002 | A |
ypt3260_L6_I003 | A |
ypt3261_L7_I004 | A |
ypt3262_L7_I005 | A |
ypt3270_L1_I007 | A |
ypt3271_L7_I008 | A |
ypt3272_L7_I010 | A |
ypt3274A_L7_I011 | A |
ypt3277_L6_I027 | A |
ypt53_L2_I032 | A |
ypt891 | A |
ypt898 | A |
ypt900_L2_I050 | A |
ypt903_L2_I054 | A |
ypt904_L4_I055 | A |
ypt906_L3_I001 | A |
ypt907_L6_I002 | A |
ypt908_L1_I003 | A |
ypt909_L5_I004 | A |
ypt911_L6_I006 | A |
ypt912 | A |
ypt917 | A |
ypt918_L3_I007 | R |
ypt920_L5_I010 | A |
ypt921_L8_I011 | A |
ypt925_L2_I022 | G |
ypt926_L2_I023 | A |
ypt932 | A |
ypt933 | A |
ypt937 | A |
ypt941_L5_I027 | A |
ypt943 | A |
ypt945_L4_I031 | A |
ypt946_L4_I032 | A |
ypt947_L5_I033 | A |
ypt948_L2_I034 | A |
ypt950_L5_I036 | A |
ypt953 | A |
ypt955 | A |
ypt957 | A |
ypt958 | A |
ypt960 | A |
ypt961 | A |
ypt962 | A |
ypt964 | A |
ypt965 | A |
ypt966 | A |
ypt971 | A |
ypt973_L4_I037 | A |
ypt975_L8_I039 | A |
ypt976_L7_I040 | A |
ypt977_L2_I041 | A |
ypt978_L2_I052 | A |
ypt980_L3_I043 | A |
ypt981_L2_I044 | A |
ypt984 | A |
yptwj | A |
147209 | A |
147830 | A |
GLF_denovo | A |
Gallus_Sonneriatii_d | A |
Ypt4879 | A |
Ypt4880 | A |
4. Population Genetics Analyses
Population | Sample # | Allele:Frequency | Genotype:Frequency |
---|---|---|---|
Afghan | 11 | A:1.00; G:0.00; | AA:1.00; |
Beijing | 11 | A:1.00; G:0.00; | AA:1.00; |
Bengal | 15 | A:1.00; G:0.00; | AA:1.00; |
Cornish_UK | 1 | A:1.00; G:0.00; | AA:1.00; |
Europe_egg | 13 | A:1.00; G:0.00; | AA:1.00; |
Europe_meat | 4 | A:1.00; G:0.00; | AA:1.00; |
Gallus_lafayetii | 4 | A:0; G:0; | NN:; |
Gallus_sonnerattii | 3 | A:0.00; G:1.00; | GG:1.00; |
G.g.bankiva | 4 | A:1.00; G:0.00; | AA:1.00; |
G.g.gallus | 6 | A:1.00; G:0.00; | AA:1.00; |
G.g.jabouillei | 27 | A:1.00; G:0.00; | AA:1.00; |
G.g.murghi | 68 | A:0.96; G:0.04; | AA:0.96; GG:0.04; |
G.g.spadiceus | 36 | A:0.97; G:0.03; | AA:0.94; AG:0.06; |
G.g.spadiceus_Thai | 9 | A:1.00; G:0.00; | AA:1.00; |
Guangxi | 6 | A:1.00; G:0.00; | AA:1.00; |
Guangzhou | 6 | A:1.00; G:0.00; | AA:1.00; |
G.varius | 12 | A:1.00; G:0.00; | AA:1.00; |
Hainan | 1 | A:1.00; G:0.00; | AA:1.00; |
Henan | 8 | A:1.00; G:0.00; | AA:1.00; |
India | 52 | A:0.93; G:0.07; | AA:0.90; GG:0.03; AG:0.07; |
Indonesia | 36 | A:1.00; G:0.00; | AA:1.00; |
Iran | 182 | A:1.00; G:0.00; | AA:1.00; |
Jiangsu | 10 | A:1.00; G:0.00; | AA:1.00; |
Jiangxi | 30 | A:0.97; G:0.03; | AA:0.95; AG:0.05; |
Liaoning | 8 | A:1.00; G:0.00; | AA:1.00; |
Pakistan | 37 | A:1.00; G:0.00; | AA:1.00; |
Rhode_USA | 1 | A:1.00; G:0.00; | AA:1.00; |
Shandong | 18 | A:1.00; G:0.00; | AA:1.00; |
Shanxi | 8 | A:1.00; G:0.00; | AA:1.00; |
Srilanka | 7 | A:1.00; G:0.00; | AA:1.00; |
Taiwan | 1 | A:0.50; G:0.50; | AG:1.00; |
Thailand | 6 | A:1.00; G:0.00; | AA:1.00; |
Tibet | 113 | A:0.84; G:0.16; | GG:0.14; AA:0.82; AG:0.05; |
Vietnan | 7 | A:0.67; G:0.33; | AA:0.67; GG:0.33; |
WhitePlymouth_USA | 1 | A:1.00; G:0.00; | AA:1.00; |
Xinjiang | 30 | A:0.93; G:0.07; | AA:0.90; GG:0.05; AG:0.05; |
Yuanbao | 24 | A:1.00; G:0.00; | AA:1.00; |
Yunnan | 49 | A:0.97; G:0.03; | AA:0.95; AG:0.05; |
5. Genotype-Phenotype Information
Chr | Position | RSID | Species/Population | Trait | Effect Allele | P-value | Reported Gene(s) Symbol | PMID |
---|