Dataset - GEND000266 - Gene Expression Nebulas

A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

A data portal of transcriptome profiles across multiple species

BioProject ID: PRJNA304631 Original Project ID: GSE75575

Strategy:	Bulk RNA-seq
Species:	Glycine max
Tissue:	Seed
Height/Length/Weight:	Seed length: 10-12 mm Seed length: 2-4 mm Seed length: 4-6 mm Seed length: 6-8 mm Seed length: 8-10 mm
Isolation_source:	Sampled seeds were immediately frozen in liquid nitrogen and stored at -70 °C.
Development Stage:	Developmental stage (defined by seed length): (Stage 1) between 2–4 mm Developmental stage (defined by seed length): (Stage 2) between 4–6 mm Developmental stage (defined by seed length): (Stage 3) between 6–8 mm Developmental stage (defined by seed length): (Stage 4) between 8–10 mm Developmental stage (defined by seed length): (Stage 5) between 10–12 mm
Biological Context:	Baseline: No Genetic: Mutation Phenotypic: Quality trait Environmental: - Spatial: Tissue Temporal: Development
Quality and Quantity:	RNA Type: poly(A)+ RNA Median Mapping Quality: 0.9652 Median Coverage: 2.82 Max Sequencing Length: 97 #Max Replicate: 3

Note:

GENDX:

Gene Expression Profiles

GENDE:

RNA Editing Profiles

GENDS:

Alternative Splicing Profiles

GENDC:

CircRNA Expression Profiles

ID: GENDX000266 Download

Reference Genome: GCF_000004515.5_Glycine_max_v2.1.103

Genome Annotation: GCF_000004515.5_Glycine_max_v2.1.103

Data Processing:

GEN Sample ID	GEN Sample Name	Sample ID	Sample Name	BioSample ID	Sample Accession	Experiment Accession	Release Date	Submission Date	Update Date	Species	Race	Ethnicity	Age	Age Unit	Gender	Source Name	Tissue	Cell Type	Cell Subtype	Cell Line	Disease	Disease State	Development Stage	Mutation	Phenotype	Case Detail	Control Detail	Growth Protocol	Treatment Protocol	Extract Protocol	Library Construction Protocol	Molecule Type	Library Layout	Strand-Specific	Library Strand	Spike-In	Strategy	Platform	Instrument Model	Cell Number	Reads Number	Gbases	AvgSpotLen1	AvgSpotLen2	Uniq Mapping Rate	Multiple Mapping Rate	Coverage Rate