Dataset - GEND000260 - Gene Expression Nebulas

A data portal of transcriptomic profiles analyzed by a unified pipeline across multiple species

A data portal of transcriptome profiles across multiple species

BioProject ID: PRJNA350792 Original Project ID: GSE89233

Strategy:	Bulk RNA-seq
Species:	Oryza sativa
Tissue:	Leaf
Isolation_source:	Rice seedlings of the Asian rice cultivar Dongjin (Oryza sativa L. ssp. Japonica) for mRNA-sequencing were transplanted in a paddy field at Daegu South Korea (approximately 35 °N) in early June in 2013. Samples were prepared between 7 and 8 AM at six time points (4 12 20 28 36 and 44 days after heading).
Biological Context:	Baseline: Yes Genetic: - Phenotypic: - Environmental: - Spatial: Tissue Temporal: Development
Quality and Quantity:	RNA Type: poly(A)+ RNA Median Mapping Quality: 0.9791 Median Coverage: 11.75 Max Sequencing Length: 197 #Max Replicate: 3

Note:

GENDX:

Gene Expression Profiles

GENDE:

RNA Editing Profiles

GENDS:

Alternative Splicing Profiles

GENDC:

CircRNA Expression Profiles

ID: GENDX000260 Download

Reference Genome: IRGSP-1.0.47

Genome Annotation: IRGSP-1.0.47

Data Processing:

GEN Sample ID	GEN Sample Name	Sample ID	Sample Name	BioSample ID	Sample Accession	Experiment Accession	Release Date	Submission Date	Update Date	Species	Race	Ethnicity	Age	Age Unit	Gender	Source Name	Tissue	Cell Type	Cell Subtype	Cell Line	Disease	Disease State	Development Stage	Mutation	Phenotype	Case Detail	Control Detail	Growth Protocol	Treatment Protocol	Extract Protocol	Library Construction Protocol	Molecule Type	Library Layout	Strand-Specific	Library Strand	Spike-In	Strategy	Platform	Instrument Model	Cell Number	Reads Number	Gbases	AvgSpotLen1	AvgSpotLen2	Uniq Mapping Rate	Multiple Mapping Rate	Coverage Rate