Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://biosig.unimelb.edu.au/thermomutdb
Full name: thermodynamic database for missense mutations
Description: A manually curated database containing >14,669 experimental data of thermodynamic parameters for wild type and mutant proteins.
Year founded: 2021
Last update:
Version: 1.0
Accessibility:
Manual:
Accessible
Real time : Checking...
Country/Region: Australia

Classification & Tag

Data type:
Data object:
NA
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: University of Melbourne
Address:
City: Melbourne
Province/State: Victoria
Country/Region: Australia
Contact name (PI/Team): Douglas E.V. Pires
Contact email (PI/Helpdesk): douglas.pires@unimelb.edu.au

Publications

33095862
ThermoMutDB: a thermodynamic database for missense mutations. [PMID: 33095862]
Xavier JS, Nguyen TB, Karmarkar M, Portelli S, Rezende PM, Velloso JPL, Ascher DB, Pires DEV.

Proteins are intricate, dynamic structures, and small changes in their amino acid sequences can lead to large effects on their folding, stability and dynamics. To facilitate the further development and evaluation of methods to predict these changes, we have developed ThermoMutDB, a manually curated database containing >14,669 experimental data of thermodynamic parameters for wild type and mutant proteins. This represents an increase of 83% in unique mutations over previous databases and includes thermodynamic information on 204 new proteins. During manual curation we have also corrected annotation errors in previously curated entries. Associated with each entry, we have included information on the unfolding Gibbs free energy and melting temperature change, and have associated entries with available experimental structural information. ThermoMutDB supports users to contribute to new data points and programmatic access to the database via a RESTful API. ThermoMutDB is freely available at: http://biosig.unimelb.edu.au/thermomutdb.

Nucleic Acids Res. 2021:49(D1) | 30 Citations (from Europe PMC, 2024-04-06)

Ranking

All databases:
975/6000 (83.767%)
Structure:
114/841 (86.564%)
Literature:
94/531 (82.486%)
975
Total Rank
30
Citations
10
z-index

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Record metadata

Created on: 2020-11-09
Curated by:
Lina Ma [2020-11-26]
Xiaonan Liu [2020-11-26]
Xiaonan Liu [2020-11-19]
Chang Liu [2020-11-09]