Database Commons
Database Commons

a catalog of worldwide biological databases

Database Profile

General information

URL: http://www.dna.affrc.go.jp
Full name: the international DNA sequence databases
Description: The major thrust of NIAS DNA Bank activities focuses on the collection and distribution of DNA materials from agricultural organisms (both plants and animals), materials derived from researches in molecular genetics, and associated genomics information.
Year founded: 1998
Last update:
Version:
Accessibility:
Manual:
Accessible
Real time : Checking...
Country/Region: Japan

Classification & Tag

Data type:
Data object:
Database category:
Major species:
NA
Keywords:

Contact information

University/Institution: Kazusa DNA Research Institute
Address:
City:
Province/State:
Country/Region: Japan
Contact name (PI/Team): T Ikemura
Contact email (PI/Helpdesk): genebank@naro.affrc.go.jp

Publications

9399868
Codon usage tabulated from the international DNA sequence databases. [PMID: 9399868]
Nakamura Y, Gojobori T, Ikemura T.

CUTG (codon usage tabulated from GenBank) is a comprehensive database for codon usage. The codon usage for each full-length protein gene has been calculated using the nucleotide sequence obtained from GenBank sequence database. The sum of the codon use of each organism has been also calculated. The data files can be obtained from anonymous ftp sites of DDBJ, DISC and EBI. The list of codonusage of genes in organisms was made searchableby name of organism through a web site http://www.dna.affrc.go.jp/ approximately nakamura/CUTG.html The compilation is synchronized with major release of GenBank.

Nucleic Acids Res. 1998:26(1) | 42 Citations (from Europe PMC, 2024-04-20)

Ranking

All databases:
3511/6000 (41.5%)
Raw bio-data:
281/539 (48.052%)
3511
Total Rank
42
Citations
1.615
z-index

Community reviews

Not Rated
Data quality & quantity:
Content organization & presentation
System accessibility & reliability:

Word cloud

Related Databases

Citing
Cited by

Record metadata

Created on: 2018-02-09
Curated by:
Lina Ma [2020-05-31]
Mengyu Pan [2018-09-26]
Yang Zhang [2018-02-24]
Pei Wang [2018-02-09]