National Genomics Data Center
BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
2,753 records from 38 NGDC & Partner databases.
| Database | Records Number | Description |
|---|---|---|
| RMVar | 808 | RNA Modification associated variants database |
| circAltas | 532 | circAtlas 2.0 |
| DrLLPS | 209 | Data resource of liquid-liquid phase separation |
| nucmap | 166 | A database of genome-wide nucleosome positioning map across species. |
| AnimalTFDB | 132 | AnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors |
| iEKPD | 128 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
| RhesusBase Genes | 93 | |
| vcg | 70 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
| MethBank SRMs | 55 | Methbank, Single-base Resolution Methylomes (SRMs) |
| EPSD | 53 | Eukaryotic Phosphorylation Site Database |
| BBCancer | 52 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
| DEG | 42 | Database of Essential Genes |
| lncRNASNP2 | 42 | |
| hTFtarget | 39 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
| iUUCD | 36 | integrated annotations for Ubiquitin and Ubiquitin-like Conjugation Database |
| MiCroKiTS | 33 | Midbody, Centrosome, Kinetochore, Telomere and Spindle |
| SEGreg | 30 | Database of specifically expressed genes and regulation |
| GenTree | 26 | GenTree, the time tree of genes along the evolutionary history |
| WERAM | 26 | Eukaryotic Writers, Erasers and Readers protein of Histone Acetylation and Methylation system Database |
| EKPD | 24 | Eukaryotic Kinase and Phosphatase Database |
| Methbank CRMs | 24 | Methbank, Consensus Reference Methylomes (CRMs) |
| lnCAR | 21 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
| dbPAF | 20 | database of Phospho-sites in Animals and Fungi |
| EWAS Data Hub | 15 | A data hub of DNA methylation array data and metadata |
| EWAS Atlas | 14 | A knowledgebase of epigenome-wide association studies |
| miRNASNP-v3 | 14 | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets |
| CancerSEA | 12 | CancerSEA: a cancer single-cell state atlas |
| PLMD | 12 | Protein Lysine Modifications Database |
| BioCode | 5 | Archive Bioinformatics Codes for Open Source Projects |
| Database Commons | 4 | Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms. |
| PTMD | 4 | A database of human disease-associated post-translational modifications |
| BioProject | 3 | Biological Project Library |
| BioSample | 2 | Biological Sample Library |
| CGDB | 2 | Circadian Gene Database |
| GSA | 2 | Genome Sequence Archive |
| DiseaseEnhancer | 1 | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. |
| EDK | 1 | Editome Disease Knowledgebase |
| GSA for Human | 1 | Genome Sequence Archive for Human |
| Database | Records Number | Description |
|---|
Powered by EBISearch
| Database | Records Number | Description |
|---|
Powered by NCBI Entrez