National Genomics Data Center

BIG Search

BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.

e.g., PRJCA000126;SAMC000385;tp53;EGFR; human; KaKs_Calculator

7,786 records from 40 NGDC & Partner databases.

Database Records Number Description
OpenLB 5,030 Publication, education and data
RMVar 808 RNA Modification associated variants database
circAltas 532 circAtlas 2.0
DrLLPS 209 Data resource of liquid-liquid phase separation
nucmap 166 A database of genome-wide nucleosome positioning map across species.
AnimalTFDB 132 AnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors
iEKPD 128 Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains
RhesusBase Genes 93
vcg 70 Virtual Chinese Genome Database is a dynamic genome database of Chinese population.
MethBank SRMs 55 Methbank, Single-base Resolution Methylomes (SRMs)
EPSD 53 Eukaryotic Phosphorylation Site Database
BBCancer 52 BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers
DEG 42 Database of Essential Genes
lncRNASNP2 42
hTFtarget 39 In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account
iUUCD 36 integrated annotations for Ubiquitin and Ubiquitin-like Conjugation Database
MiCroKiTS 33 Midbody, Centrosome, Kinetochore, Telomere and Spindle
SEGreg 30 Database of specifically expressed genes and regulation
GenTree 26 GenTree, the time tree of genes along the evolutionary history
WERAM 26 Eukaryotic Writers, Erasers and Readers protein of Histone Acetylation and Methylation system Database
EKPD 24 Eukaryotic Kinase and Phosphatase Database
Methbank CRMs 24 Methbank, Consensus Reference Methylomes (CRMs)
lnCAR 21 lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays
dbPAF 20 database of Phospho-sites in Animals and Fungi
EWAS Data Hub 15 A data hub of DNA methylation array data and metadata
EWAS Atlas 14 A knowledgebase of epigenome-wide association studies
miRNASNP-v3 14 miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets
CancerSEA 12 CancerSEA: a cancer single-cell state atlas
PLMD 12 Protein Lysine Modifications Database
BioCode 5 Archive Bioinformatics Codes for Open Source Projects
Database Commons 4 Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms.
BioProject 4 Biological Project Library
PTMD 4 A database of human disease-associated post-translational modifications
BioSample 2 Biological Sample Library
CGDB 2 Circadian Gene Database
GSA 2 Genome Sequence Archive
GSA for Human 2 Genome Sequence Archive for Human
CGGA 1 Chinese Glioma Genome Atlas
DiseaseEnhancer 1 DiseaseEnhancer: a resource of human disease-associated enhancer catalog.
EDK 1 Editome Disease Knowledgebase
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