BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
2,754 records from 39 NGDC & Partner databases.
Database | Records Number | Description |
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RMVar | 808 | RNA Modification associated variants database |
circAltas | 532 | circAtlas 2.0 |
DrLLPS | 209 | Data resource of liquid-liquid phase separation |
nucmap | 166 | A database of genome-wide nucleosome positioning map across species. |
AnimalTFDB | 132 | AnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors |
iEKPD | 128 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
RhesusBase Genes | 93 | |
vcg | 70 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
MethBank SRMs | 55 | Methbank, Single-base Resolution Methylomes (SRMs) |
EPSD | 53 | Eukaryotic Phosphorylation Site Database |
BBCancer | 52 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
DEG | 42 | Database of Essential Genes |
lncRNASNP2 | 42 | |
hTFtarget | 39 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
iUUCD | 36 | integrated annotations for Ubiquitin and Ubiquitin-like Conjugation Database |
MiCroKiTS | 33 | Midbody, Centrosome, Kinetochore, Telomere and Spindle |
SEGreg | 30 | Database of specifically expressed genes and regulation |
GenTree | 26 | GenTree, the time tree of genes along the evolutionary history |
WERAM | 26 | Eukaryotic Writers, Erasers and Readers protein of Histone Acetylation and Methylation system Database |
EKPD | 24 | Eukaryotic Kinase and Phosphatase Database |
Methbank CRMs | 24 | Methbank, Consensus Reference Methylomes (CRMs) |
lnCAR | 21 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
dbPAF | 20 | database of Phospho-sites in Animals and Fungi |
EWAS Data Hub | 15 | A data hub of DNA methylation array data and metadata |
EWAS Atlas | 14 | A knowledgebase of epigenome-wide association studies |
miRNASNP-v3 | 14 | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets |
CancerSEA | 12 | CancerSEA: a cancer single-cell state atlas |
PLMD | 12 | Protein Lysine Modifications Database |
BioCode | 5 | Archive Bioinformatics Codes for Open Source Projects |
Database Commons | 4 | Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms. |
PTMD | 4 | A database of human disease-associated post-translational modifications |
BioProject | 3 | Biological Project Library |
BioSample | 2 | Biological Sample Library |
CGDB | 2 | Circadian Gene Database |
GSA | 2 | Genome Sequence Archive |
CGGA | 1 | Chinese Glioma Genome Atlas |
DiseaseEnhancer | 1 | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. |
EDK | 1 | Editome Disease Knowledgebase |
GSA for Human | 1 | Genome Sequence Archive for Human |
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