National Genomics Data Center
BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
38,794,993 records from 46 NGDC & Partner databases.
| Database | Records Number | Description |
|---|---|---|
| GVM | 16,739,594 | Genome Variation Map |
| OpenLB | 13,167,896 | Publication, education and data |
| lncRNASNP2 | 4,443,771 | |
| RMVar | 1,615,252 | RNA Modification associated variants database |
| circAltas | 610,406 | circAtlas 2.0 |
| EWAS Data Hub | 597,253 | A data hub of DNA methylation array data and metadata |
| LncBook | 409,204 | A curated knowledgebase of human long non-coding RNAs. |
| EWAS Atlas | 262,089 | A knowledgebase of epigenome-wide association studies |
| 2019 Novel Coronavirus Resources | 194,678 | 2019nCoVR integrated the public SARS-CoV-2 sequences from GISAID, NCBI, CNGB and CNCB/NGDC |
| BBCancer | 137,210 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
| LncExpDB | 101,293 | Expression Database of Human Long non-coding RNAs |
| GenTree | 63,151 | GenTree, the time tree of genes along the evolutionary history |
| MethBank SRMs | 60,479 | Methbank, Single-base Resolution Methylomes (SRMs) |
| Methbank CRMs | 60,415 | Methbank, Consensus Reference Methylomes (CRMs) |
| SEGreg | 53,156 | Database of specifically expressed genes and regulation |
| BioSample | 44,659 | Biological Sample Library |
| vcg | 43,801 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
| CancerSEA | 34,227 | CancerSEA: a cancer single-cell state atlas |
| EPSD | 30,679 | Eukaryotic Phosphorylation Site Database |
| DEG | 28,458 | Database of Essential Genes |
| lnCAR | 28,420 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
| Gene Expression Nebulas | 19,446 | Gene Expression Nebulas (GEN) is a data portal of gene expression profiles under various conditions derived entirely from RNA-Seq data analysis in multiple species. |
| dbPAF | 18,792 | database of Phospho-sites in Animals and Fungi |
| GSA | 13,189 | Genome Sequence Archive |
| ZCURVE_CoVdb | 7,054 | Database of Essential Genes |
| GWH | 6,933 | Genome Warehouse |
| Database Commons | 721 | Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms. |
| BioCode | 675 | Archive Bioinformatics Codes for Open Source Projects |
| PTMD | 594 | A database of human disease-associated post-translational modifications |
| CellMarker | 467 | CellMarker: a manually curated resource of cell markers in human and mouse. |
| BioProject | 262 | Biological Project Library |
| GSA for Human | 259 | Genome Sequence Archive for Human |
| RhesusBase Genes | 208 | |
| EDK | 110 | Editome Disease Knowledgebase |
| eLMSG | 67 | An eLibrary of Microbial Systematics and Genomics |
| NODE | 31 | The National Omics Data Encyclopedia |
| iEKPD | 29 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
| PLMD | 26 | Protein Lysine Modifications Database |
| hTFtarget | 15 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
| CGGA | 11 | Chinese Glioma Genome Atlas |
| CGDB | 6 | Circadian Gene Database |
| DoriC | 2 | Database of Replication Origins |
| iUUCD | 2 | integrated annotations for Ubiquitin and Ubiquitin-like Conjugation Database |
| GTDB | 1 | Glycosyltransferases Database |
| GWAS Atlas | 1 | GWAS Atlas is a curated resource of genome-wide variant-trait associations |
| OMix | 1 | OMix |
| Database | Records Number | Description |
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