National Genomics Data Center
BIG Search is a scalable text search engine built based on ElasticSearch (a highly scalable open-source full-text search and analytics engine based on Apache Lucene). It features cross-domain search and facilitates users to gain access to a wide range of biomedical data, not only from NGDC databases but also partner databases throughout the world.
1,040 records from 30 NGDC & Partner databases.
| Database | Records Number | Description |
|---|---|---|
| iEKPD | 323 | Integrated annotations for Eukaryotic protein Kinases, protein Phosphatases & phosphoprotein-binding Domains |
| RMVar | 258 | RNA Modification associated variants database |
| circAltas | 179 | circAtlas 2.0 |
| EKPD | 109 | Eukaryotic Kinase and Phosphatase Database |
| AnimalTFDB | 70 | AnimalTFDB is a comprehensive database including classification and annotation of genome-wide transcription factors |
| nucmap | 16 | A database of genome-wide nucleosome positioning map across species. |
| SEGreg | 11 | Database of specifically expressed genes and regulation |
| RhesusBase Genes | 10 | |
| MethBank SRMs | 9 | Methbank, Single-base Resolution Methylomes (SRMs) |
| vcg | 7 | Virtual Chinese Genome Database is a dynamic genome database of Chinese population. |
| BioCode | 5 | Archive Bioinformatics Codes for Open Source Projects |
| DEG | 5 | Database of Essential Genes |
| EPSD | 5 | Eukaryotic Phosphorylation Site Database |
| hTFtarget | 5 | In this hTFtarget database, we collected comprehensive human TF ChIP-Seq data and customized an analysis workflow to identify reliable TF targets with taking epigenomic states into account |
| dbPAF | 3 | database of Phospho-sites in Animals and Fungi |
| lnCAR | 3 | lnCAR | A comprehensive resource for lncRNAs from Cancer Arrays |
| THANATOS | 2 | THe Autophagy, Necrosis, ApopTosis OrchestratorS |
| BBCancer | 2 | BBCancer: an expression atlas of blood-based biomarkers in the early diagnosis of cancers |
| CancerSEA | 2 | CancerSEA: a cancer single-cell state atlas |
| GenTree | 2 | GenTree, the time tree of genes along the evolutionary history |
| lncRNASNP2 | 2 | |
| Methbank CRMs | 2 | Methbank, Consensus Reference Methylomes (CRMs) |
| PLMD | 2 | Protein Lysine Modifications Database |
| PTMD | 2 | A database of human disease-associated post-translational modifications |
| Database Commons | 1 | Database Commons is a curated catalogue of biological databases, providing people with easy access to a comprehensive collection of publicly available biological databases encompassing different data types and spanning diverse organisms. |
| DiseaseEnhancer | 1 | DiseaseEnhancer: a resource of human disease-associated enhancer catalog. |
| EWAS Atlas | 1 | A knowledgebase of epigenome-wide association studies |
| EWAS Data Hub | 1 | A data hub of DNA methylation array data and metadata |
| EDK | 1 | Editome Disease Knowledgebase |
| miRNASNP-v3 | 1 | miRNASNP-v3 is a comprehensive database for SNPs and disease-related variations in miRNAs and miRNA targets |
| Database | Records Number | Description |
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