Hypseocharis bilobata - Plant Editosome Database - BIG Data Center

Summary

Species: Hypseocharis bilobata
NCBI Taxonomy: 253189
Organelle:Chloroplast (NC_023260.1)
Edited Genes:20
Editing Events:60
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
atpA365922
66282
66516
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCU=>CUU
UCA=>UUA
UCA=>UUA
P=>L
S=>L
S=>L
atpF167978CDS-mRNAC-to-UCCA=>CUAP=>L
atpI171214CDS-mRNAC-to-UCCA=>CUAP=>L
ccsA2134454
134941
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
GCG=>GUG
CCC=>UCC
A=>V
P=>S
matK43602
4332
4470
4716
CDS
CDS
CDS
CDS
-
-
-
-
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CAC=>UAC
CUU=>UUU
CUU=>UUU
S=>L
H=>Y
L=>F
L=>F
ndhA3129000
129222
129729
CDS
CDS
CDS
+
+
+
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCU=>UUU
S=>L
S=>L
S=>F
ndhB9149516
149742
150161
150167
150251
150260
150411
150530
150848
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CAU=>UAU
UCA=>UUA
UCA=>UUA
UCU=>UUU
CCA=>CUA
CAU=>UAU
CCA=>CUA
UCA=>UUA
P=>L
H=>Y
S=>L
S=>L
S=>F
P=>L
H=>Y
P=>L
S=>L
ndhD8132575
132620
132956
133172
133247
133451
133871
133981
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
ACG=>AUG
UCC=>UUC
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
CUU=>UUU
T=>M
S=>F
S=>L
S=>L
S=>L
S=>L
S=>L
L=>F
ndhF5102070
101588
100741
100445
100414
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCC=>UCC
CCC=>CUC
CUU=>UUU
UCA=>UUA
CAC=>UAC
P=>S
P=>L
L=>F
S=>L
H=>Y
ndhG1131017CDS+mRNAC-to-UACA=>AUAT=>I
petB139915CDS+mRNAC-to-UCGG=>UGGR=>W
psbE18381CDS+mRNAC-to-UCCU=>UCUP=>S
psbF18505CDS+mRNAC-to-UUCU=>UUUS=>F
psbL18572CDS+mRNAC-to-UACG=>AUGT=>M
rpl20232600
32423
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
GCU=>GUU
S=>L
A=>V
rpoB682001
81478
81463
81016
80197
79603
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
UCA=>UUA
UCG=>UUG
GCG=>GUG
GCU=>GUU
UCA=>UUA
L=>F
S=>L
S=>L
A=>V
A=>V
S=>L
rpoC1178698CDS-mRNAC-to-UACC=>AUCT=>I
rpoC2573264
74227
74564
74681
74978
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
GCU=>GUU
GCU=>GUU
CUU=>UUU
CCG=>UCG
CUU=>UUU
A=>V
A=>V
L=>F
P=>S
L=>F
rps14250856
50925
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
rps2371552
71911
72101
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCG=>UCG
UCA=>UUA
CUU=>UUU
P=>S
S=>L
L=>F

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)