Dendrobium officinale - Plant Editosome Database - BIG Data Center

Summary

Species: Dendrobium officinale
NCBI Taxonomy: 142615
Organelle:Chloroplast (NC_024019.1)
Edited Genes:22
Editing Events:54
Gene Editing Events Genomic Position Region Strand RNA Type Codons Amino Acids
accD457291
57660
58101
58347
CDS
CDS
CDS
CDS
+
+
+
+
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
UCU=>UUU
UCU=>UUU
UCA=>UUA
CCU=>CUU
S=>F
S=>F
S=>L
P=>L
atpA111332CDS-mRNAC-to-UUCA=>UUAS=>L
atpB152411CDS-mRNAC-to-UUCA=>UUAS=>L
atpF112640CDS-mRNAC-to-UCCA=>CUAP=>L
atpI215099
14898
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
CCU=>CUU
UCA=>UUA
P=>L
S=>L
ccsA1114526CDS+mRNAC-to-UCCC=>UCCP=>S
clpP270561
70084
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
matK32125
2473
2914
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CAC=>UAC
CAU=>UAU
CAU=>UAU
H=>Y
H=>Y
H=>Y
ndhB11138610
138517
138484
138616
138892
138973
139261
138366
138322
138247
137929
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+
+
+
+
+
+
+
+
+
+
+
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
CCA=>CUA
UCC=>UUC
UCA=>UUA
UCA=>UUA
UCA=>UUA
CCA=>CUA
CAU=>UAU
ACG=>AUG
CCA=>CUA
UCA=>UUA
S=>L
P=>L
S=>F
S=>L
S=>L
S=>L
P=>L
H=>Y
T=>M
P=>L
S=>L
ndhD1116448CDS-mRNAC-to-UACG=>AUGT=>M
ndhJ149377-49829NA-mRNANANA=>NANA=>NA
petB277156
76963
CDS
CDS
+
+
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
CGG=>UGG
P=>L
R=>W
psaB238558
39384
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
ACA=>AUA
CUU=>UUU
T=>I
L=>F
psaI159266CDS+mRNAC-to-UUCU=>UUUS=>F
psbF164300CDS-mRNAC-to-UUCU=>UUUS=>F
rpl22149949
87382
CDS
CDS
+
-
mRNA
mRNA
C-to-U
C-to-U
ACG=>AUG
ACG=>AUG
T=>M
T=>M
rpl20268983
68701
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
ACA=>AUA
UCA=>UUA
T=>I
S=>L
rpoA279561
79099
CDS
CDS
-
-
mRNA
mRNA
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
rpoB724719
25211
26522
26579
26594
26672
26807
CDS
CDS
CDS
CDS
CDS
CDS
CDS
-
-
-
-
-
-
-
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
GCU=>GUU
CCG=>CUG
UCG=>UUG
UCA=>UUA
UCG=>UUG
UCU=>UUU
S=>L
A=>V
P=>L
S=>L
S=>L
S=>L
S=>F
rpoC1323104
22963
22528
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
CCA=>CUA
UCU=>UUU
UCG=>UUG
P=>L
S=>F
S=>L
rps14137316CDS-mRNAC-to-UCCA=>CUAP=>L
ycf3343234
43093
43087
CDS
CDS
CDS
-
-
-
mRNA
mRNA
mRNA
C-to-U
C-to-U
C-to-U
UCU=>UUU
ACG=>AUG
CCA=>CUA
S=>F
T=>M
P=>L

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)