rpoC1 - Plant Editosome Database - BIG Data Center

Summary

Gene: rpoC1
Function: RNA polymerase
Species: 68
Editing Factors:15 (DOT4, DYW2, ECB2, HEMC, MEF37, MORF2, MORF8, ORRM1, ORRM1,ORRM6, ORRM6, OTP90, OZ1, PGN, PPO1, YL)
Editing Types:
U-to-C (85)
C-to-U (85)
Editing Events: 285 (NA: 115   U-to-C: 85   C-to-U: 85)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast2
NA: 2
20190-21854
22577-23008
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Alsophila spinulosaChloroplast2
NA: 2
20404-22035
22767-23198
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Ampelopteris proliferaChloroplast4
NA: 2
U-to-C: 2
20585-22255
21427
22971-23402
23288
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast32
C-to-U: 15
U-to-C: 17
6855
6894
6986
7095
8147
8244
8253
8304
8321
8439
8456
8462
8466
8499
8537
8558
8586
8604
8628
8652
8738
8805
8832
8864
8877
8892
8915
8970
9003
9077
9393
9396
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+C-to-U
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
U-to-C
C-to-U
C-to-U
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
UCA=>UUA
UGA=>CGA
UCU=>UUU
AUU=>ACU
UCU=>CCU
UCU=>UUU
CUU=>CCU
CUC=>CCC
CUU=>CCU
UGC=>CGC
UCU=>UUU
UAA=>CAA
UGU=>CGU
UCG=>UUG
UAA=>CAA
GCU=>GUU
CGU=>UGU
UCU=>UUU
UAA=>CAA
UGU=>CGU
CCU=>CUU
UGA=>CGA
UUC=>UCC
UUG=>UCG
CCU=>CUU
CAU=>UAU
ACU=>AUU
CUU=>CCU
UCC=>UUC
UCA=>UUA
CUG=>CCG
CCU=>CUU
S=>L
TERM=>R
S=>F
I=>T
S=>P
S=>F
L=>P
L=>P
L=>P
C=>R
S=>F
TERM=>Q
C=>R
S=>L
TERM=>Q
A=>V
R=>C
S=>F
TERM=>Q
C=>R
P=>L
TERM=>R
F=>S
L=>S
P=>L
H=>Y
T=>I
L=>P
S=>F
S=>L
L=>P
P=>L
Arabidopsis lyrata subsp. lyrata MN47Chloroplast1
C-to-U: 1
21690NA+C-to-UNA=>NANA=>NA
Arabidopsis thalianaChloroplast2
C-to-U: 2
21785CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Asplenium pekinenseChloroplast4
NA: 2
U-to-C: 2
20387-22018
21190
22716-23147
23033
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast3
NA: 2
U-to-C: 1
20169-21836
22551-22982
22868
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast3
NA: 2
U-to-C: 1
20481-22145
21317
22839-23270
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast3
NA: 2
U-to-C: 1
20512-22176
21348
22865-23296
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast3
NA: 2
U-to-C: 1
20459-22123
21295
22825-23256
NA
CDS
CDS
+
-
U-to-C
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
20499-22163
21335
22865-23296
23295
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
20544-22208
22915-23346
23232
23345
NA
CDS
NA
CDS
+
-
C-to-U
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast4
NA: 2
U-to-C: 2
20474-22144
21316
22858-23289
23175
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast6
C-to-U: 6
22685
22791
23261
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CCA=>CUA
CCA=>CUA
UCA=>UUA
UCA=>UUA
CGG=>UGG
CGG=>UGG
P=>L
P=>L
S=>L
S=>L
R=>W
R=>W
Cuscuta reflexaChloroplast1
C-to-U: 1
19224CDS-C-to-UUCG=>UUGS=>L
Cypripedium macranthosChloroplast3
C-to-U: 3
22218
22320
22359
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
ACC=>AUC
CCA=>CUA
UCU=>UUU
T=>I
P=>L
S=>F
Cyrtomium devexiscapulaeChloroplast4
NA: 2
U-to-C: 2
20659-22281
21453
22966-23397
23283
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast4
NA: 2
U-to-C: 2
20798-22407
21592
23104-23536
23422
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast4
NA: 2
U-to-C: 2
20558-22222
21394
22929-23360
23246
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dendrobium officinaleChloroplast3
C-to-U: 3
22528
22963
23104
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCG=>UUG
UCU=>UUU
CCA=>CUA
S=>L
S=>F
P=>L
Deparia lanceaChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20171-21835
21007
22553-22984
22870
22983
NA
CDS
NA
CDS
NA
+
-
U-to-C
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast4
NA: 2
U-to-C: 2
20445-22109
21281
22823-23254
23140
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast3
NA: 2
U-to-C: 1
20500-22164
22862-23293
23179
CDS
NA
CDS
-
+
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis cavalerianaChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20592-22256
21428
22940-23371
23257
23370
NA
CDS
NA
CDS
NA
+
-
U-to-C
NA
C-to-U
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast4
NA: 2
U-to-C: 2
20644-22308
21480
22994-23425
23311
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20441-22105
21277
22809-23240
23126
23239
NA
CDS
NA
CDS
NA
+
-
C-to-U
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20409-22073
21245
22776-23207
23093
23206
CDS
NA
CDS
NA
NA
-
+
NA
U-to-C
NA
C-to-U
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast4
NA: 2
U-to-C: 2
20443-22107
21279
22817-23248
23134
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast4
NA: 2
U-to-C: 2
20456-22120
21292
22816-23247
23133
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20467-22122
21294
22825-23256
23142
23255
NA
NA
CDS
NA
CDS
+
-
C-to-U
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast2
NA: 2
35413-37038
37807-38232
NA
NA
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dryopteris decipiensChloroplast4
NA: 2
U-to-C: 2
20436-22058
21230
22750-23181
23067
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hevea brasiliensisChloroplast1
C-to-U: 1
19184CDS+C-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20630-22294
21466
22983-23414
23300
23413
CDS
NA
NA
CDS
NA
-
+
NA
U-to-C
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast3
NA: 2
U-to-C: 1
20478-22142
22853-23284
23170
CDS
NA
CDS
-
+
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast4
NA: 2
U-to-C: 2
20386-22050
21222
22758-23189
23075
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast1
C-to-U: 1
78698CDS-C-to-UACC=>AUCT=>I
Isoetes flaccidaChloroplast2
NA: 2
80041-81678
82435-82863
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Jenufa minutaChloroplast1
NA: 1
134166-138074CDS-NANA=>NANA=>NA
Lepisorus clathratusChloroplast4
NA: 2
U-to-C: 2
19325-20974
19387
21737-22168
22054
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Linum usitatissimumChloroplast1
C-to-U: 1
16894CDS-C-to-UUCG=>UUGS=>L
Lygodium japonicumChloroplast1
NA: 1
21036-23057CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast4
NA: 2
U-to-C: 2
20568-22238
21410
22953-23384
23270
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast2
NA: 2
23337-24965
25671-26102
CDS
CDS
-NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Matteuccia struthiopterisChloroplast5
C-to-U: 1
NA: 2
U-to-C: 2
20604-22268
21440
22980-23411
23297
23410
CDS
NA
CDS
NA
NA
-
+
NA
U-to-C
NA
C-to-U
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast4
C-to-U: 4
37332
38584
CDS
CDS
CDS
CDS
+C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
S=>L
Myriopteris lindheimeriChloroplast4
NA: 2
U-to-C: 2
20786-22432
21616
23129-23560
23446
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast2
C-to-U: 2
23498CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
23429CDS-C-to-UUCA=>UUAS=>L
Nothoceros aenigmaticusPlastid6
NA: 6
11441-11872
11441-14229
12616-14229
NA
NA
Exon
Exon
Exon
Exon
+NA
NA
NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast4
NA: 2
U-to-C: 2
20521-22185
21357
22891-23322
23208
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pelargonium alternansChloroplast6
C-to-U: 6
27713
28464
28670
28760
29184
29684
CDS
CDS
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
CUU=>UUU
CCG=>UCG
ACG=>AUG
ACU=>AUU
ACC=>AUC
GCU=>GUU
L=>F
P=>S
T=>M
T=>I
T=>I
A=>V
Phalaenopsis equestrisChloroplast4
C-to-U: 4
22972
23101
23410
23551
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCU=>UUU
UCG=>UUG
UCA=>UUA
S=>L
S=>F
S=>L
S=>L
Pseudophegopteris auritaChloroplast4
NA: 2
U-to-C: 2
20276-21946
21118
22655-23086
22972
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast3
NA: 2
U-to-C: 1
20574-22219
22901-23333
23219
CDS
CDS
NA
-
+
NA
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast4
NA: 2
U-to-C: 2
20566-22230
21402
22942-23373
23259
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea elegansChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
14028-15614
16453-16884
16770
16883
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast4
C-to-U: 1
NA: 2
U-to-C: 1
13244-14851
15684-16115
16001
16114
CDS
NA
CDS
NA
-
+
NA
U-to-C
NA
C-to-U
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Sedum sarmentosumChloroplast1
NA: 1
20615-22273CDS-NANA=>NANA=>NA
Solanum lycopersicumChloroplast3
C-to-U: 3
23085CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
Spirodela polyrhiza 7498Chloroplast4
NA: 4
23106-24734
25442-25894
CDS
CDS
CDS
CDS
-NA
NA
NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Stegnogramma sagittifoliaChloroplast4
NA: 2
U-to-C: 2
20518-22182
21360
22885-23316
23202
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Takakia lepidozioidesChloroplast2
NA: 2
10800-11231
12002-13612
NA
NA
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast4
NA: 2
U-to-C: 2
20417-22081
21253
22770-23201
23087
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast3
NA: 2
U-to-C: 1
20451-22115
22802-23233
23119
CDS
NA
CDS
-
+
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast4
NA: 2
U-to-C: 2
20507-22171
21343
22878-23309
23195
NA
CDS
NA
CDS
+
-
U-to-C
NA
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)