atpA - Plant Editosome Database - BIG Data Center

Summary

Gene: atpA
Function: ATP synthase
Species: 66
Editing Factors:3 (ORRM1, OsSLC1, SlORRM4)
Editing Types:
U-to-C (82)
C-to-U (51)
Editing Events: 183 (U-to-C: 82   C-to-U: 51   NA: 50)
External Link: NCBI Gene
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid
Adiantum capillus-venerisChloroplast1
NA: 1
9744-11267CDS-NANA=>NANA=>NA
Alsophila spinulosaChloroplast1
NA: 1
10130-11653CDS-NANA=>NANA=>NA
Ampelopteris proliferaChloroplast2
NA: 1
U-to-C: 1
10186-11709
10683
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Anthoceros angustusChloroplast25
C-to-U: 14
U-to-C: 11
18726
18783
18829
18889
18976
18981
18988
19066
19099
19141
19146
19399
19411
19435
19461
19467
19654
19711
19794
19810
19935
19999
20019
20143
20167
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
CDS
+U-to-C
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
C-to-U
C-to-U
C-to-U
U-to-C
U-to-C
C-to-U
U-to-C
C-to-U
C-to-U
U-to-C
C-to-U
U-to-C
C-to-U
CUA=>CCA
UCA=>UUA
UCG=>UUG
UAA=>CAA
UGU=>CGU
UCA=>UUA
UAA=>CAA
UGC=>CGC
ACU=>AUU
CUC=>CCC
UCU=>UUU
ACU=>AUU
UCC=>UUC
UCA=>UUA
CCU=>CUU
UGU=>CGU
UAA=>CAA
UCU=>UUU
UAG=>CAG
UCA=>UUA
ACU=>AUU
UAA=>CAA
GCA=>GUA
UAA=>CAA
UCA=>UUA
L=>P
S=>L
S=>L
TERM=>Q
C=>R
S=>L
TERM=>Q
C=>R
T=>I
L=>P
S=>F
T=>I
S=>F
S=>L
P=>L
C=>R
TERM=>Q
S=>F
TERM=>Q
S=>L
T=>I
TERM=>Q
A=>V
TERM=>Q
S=>L
Asplenium pekinenseChloroplast3
NA: 1
U-to-C: 2
10488
11412
9994-11514
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Asplenium prolongatumChloroplast3
NA: 1
U-to-C: 2
10225
11149
9728-11251
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium anisopterumChloroplast3
NA: 1
U-to-C: 2
10092-11615
10589
11513
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium opacumChloroplast3
NA: 1
U-to-C: 2
10116-11639
10613
11537
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sheareriChloroplast3
NA: 1
U-to-C: 2
10118-11641
10615
11539
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Athyrium sinenseChloroplast3
NA: 1
U-to-C: 2
10116-11639
10613
11537
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Austroblechnum melanocaulonChloroplast2
NA: 1
U-to-C: 1
10119-11642
11540
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Christella appendiculataChloroplast2
NA: 1
U-to-C: 1
10138-11661
10635
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cocos nuciferaChloroplast4
C-to-U: 4
10833
11067
CDS
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
UCA=>UUA
UCA=>UUA
S=>L
S=>L
S=>L
S=>L
Cypripedium macranthosChloroplast1
C-to-U: 1
10689CDS-C-to-UUCA=>UUAS=>L
Cyrtomium devexiscapulaeChloroplast3
NA: 1
U-to-C: 2
10193-11716
10690
11614
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cyrtomium falcatumChloroplast3
NA: 1
U-to-C: 2
10337-11860
10834
11758
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Cystopteris chinensisChloroplast3
NA: 1
U-to-C: 2
10142-11665
10639
11563
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Dendrobium officinaleChloroplast1
C-to-U: 1
11332CDS-C-to-UUCA=>UUAS=>L
Deparia lanceaChloroplast3
NA: 1
U-to-C: 2
10296
11220
9799-11322
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia pycnosoraChloroplast3
NA: 1
U-to-C: 2
10088-11611
10585
11509
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deparia viridifronsChloroplast3
NA: 1
U-to-C: 2
10117-11640
10614
11538
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Deschampsia antarcticaPlastid1
C-to-U: 1
34667CDS+C-to-UUCA=>UUAS=>L
Diplaziopsis cavalerianaChloroplast3
NA: 1
U-to-C: 2
10218-11741
10715
11639
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplaziopsis javanicaChloroplast3
NA: 1
U-to-C: 2
10274-11797
10771
11695
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium bellumChloroplast3
NA: 1
U-to-C: 2
10076-11599
10573
11497
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dilatatumChloroplast3
NA: 1
U-to-C: 2
10043-11566
10540
11464
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium dushanenseChloroplast3
NA: 1
U-to-C: 2
10089-11612
10586
11510
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium striatumChloroplast3
NA: 1
U-to-C: 2
10068-11591
10565
11489
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplazium unilobumChloroplast3
NA: 1
U-to-C: 2
10087-11610
10584
11508
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Diplopterygium glaucumChloroplast1
NA: 1
25025-26569NA-NANA=>NANA=>NA
Dryopteris decipiensChloroplast3
NA: 1
U-to-C: 2
10456
11380
9959-11482
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Forsythia suspensaChloroplast1
C-to-U: 1
11809CDS-C-to-UUCA=>UUAS=>L
Homalosorus pycnocarposChloroplast3
NA: 1
U-to-C: 2
10249-11772
10746
11670
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hymenasplenium unilateraleChloroplast2
NA: 1
U-to-C: 1
10030-11553
11451
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypodematium crenatumChloroplast3
NA: 1
U-to-C: 2
10494
11418
9997-11520
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Hypseocharis bilobataChloroplast3
C-to-U: 3
65922
66282
66516
CDS
CDS
CDS
-C-to-U
C-to-U
C-to-U
CCU=>CUU
UCA=>UUA
UCA=>UUA
P=>L
S=>L
S=>L
Lepisorus clathratusChloroplast2
NA: 1
U-to-C: 1
10285
8864-10387
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Lygodium japonicumChloroplast1
NA: 1
10796-12319CDS-NANA=>NANA=>NA
Macrothelypteris torresianaChloroplast3
NA: 1
U-to-C: 2
10155-11678
10652
11576
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Marsilea crenataChloroplast1
NA: 1
12918-14441CDS-NANA=>NANA=>NA
Matteuccia struthiopterisChloroplast3
NA: 1
U-to-C: 2
10188-11711
10685
11609
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Millettia pinnataChloroplast2
C-to-U: 2
50491CDS
CDS
+C-to-U
C-to-U
CCC=>CUC
CCC=>CUC
P=>L
P=>L
Myriopteris lindheimeriChloroplast3
NA: 1
U-to-C: 2
10352-11875
10849
11773
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Nicotiana sylvestrisChloroplast2
C-to-U: 2
11361CDS
CDS
-C-to-U
C-to-U
CCC=>CUC
CCC=>CUC
P=>L
P=>L
Nicotiana tomentosiformisChloroplast1
C-to-U: 1
11301CDS-C-to-UCCC=>CUCP=>L
Nothoceros aenigmaticusPlastid2
NA: 2
23050-24573NA
NA
+NA
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Onoclea sensibilisChloroplast3
NA: 1
U-to-C: 2
10096-11619
10593
11517
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Orobanche californicaChloroplast1
NA: 1
10309-11832CDS-NANA=>NANA=>NA
Panicum virgatumChloroplast1
C-to-U: 1
37043CDSNAC-to-UNA=>NAS=>L
Pelargonium alternansChloroplast2
C-to-U: 2
17385
17619
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Phalaenopsis equestrisChloroplast2
C-to-U: 2
11369
11744
CDS
CDS
-C-to-U
C-to-U
UCA=>UUA
UCA=>UUA
S=>L
S=>L
Pseudophegopteris auritaChloroplast3
NA: 1
U-to-C: 2
10130-11653
10627
11551
CDS
NA
NA
-
+
NA
U-to-C
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Pteridium aquilinum subsp. aquilinumChloroplast3
NA: 1
U-to-C: 2
10232-11755
10729
11653
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Rhachidosorus consimilisChloroplast3
NA: 1
U-to-C: 2
10174-11697
10671
11595
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Saccharum hybrid cultivar SP80-3280Chloroplast1
C-to-U: 1
99853CDS+C-to-UUCA=>UUAS=>L
Schizaea elegansChloroplast2
NA: 1
U-to-C: 1
3981-5504
5402
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Schizaea pectinataChloroplast2
NA: 1
U-to-C: 1
3219-4742
4640
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Silene conicaChloroplast1
C-to-U: 1
10119CDS-C-to-UUCC=>UCUS=>S
Silene latifoliaChloroplast1
C-to-U: 1
10197CDS-C-to-UUCC=>UCUS=>S
Silene noctifloraChloroplast1
C-to-U: 1
10176CDS-C-to-UUCC=>UCUS=>S
Silene vulgarisChloroplast2
C-to-U: 2
10136CDS
CDS
-C-to-U
C-to-U
UCC=>UCU
UCC=>UCU
S=>S
S=>S
Stegnogramma sagittifoliaChloroplast2
NA: 1
U-to-C: 1
10114-11637
10611
NA
CDS
+
-
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia macrochlaenaChloroplast3
NA: 1
U-to-C: 2
10061-11584
10558
11482
NA
NA
CDS
+
-
U-to-C
U-to-C
NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodsia polystichoidesChloroplast3
NA: 1
U-to-C: 2
10089-11612
10586
11510
NA
CDS
NA
+
-
U-to-C
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Woodwardia unigemmataChloroplast2
NA: 1
U-to-C: 1
10104-11627
11525
CDS
NA
-
+
NA
U-to-C
NA=>NA
NA=>NA
NA=>NA
NA=>NA
Species Organelle Editing Events Editing Types Genomic Position Region Strand Type Codons Amino Acid

( NA = Data Not Available )

Last update: Jul 2021 (version 1.0)