PpPPR_79 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: PpPPR_79
Synonym: Phypa_192787
Description: Encodes a PPR protein involved in RNA editing at the nad5-1 (nad5-C598) site in the mitochondrial transcripts.
Protein Family: PPR
Subclass: DYW
Construct Structure: PLS-E/E+-DYW
Gene ID & Species: PP1S186_64V6 (Physcomitrella patens)
Edited Gene(s): nad5
Editing Type(s): C-to-U (2)
Publication(s): [1] The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria, FEBS Letters, 2011. [PMID=21708151]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Physcomitrella patens PP1S186_64V6 Mitochondrion nad5 598 CDS C-to-U CGU=>UGU R=>C Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAΔ79Gene Cassettehpt gene cassetteKnockoutSevere growth retardation of the protonemataProtonema3 daysDirect Sequencing of PCR Products0.00%UneditedAbsent21708151
NAWTNo treatmentNo treatmentNo treatmentNo treatmentProtonema3 daysDirect Sequencing of PCR Products100.00%CompleteNone21708151
Last update: Jul 2021 (version 1.0)