PPR596 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: PPR596
Synonym: PENTATRICOPEPTIDE REPEAT 596
Description: Encodes a P-subfamily protein that influenced editing efficiency.
Protein Family: PPR
Subclass: P
Construct Structure: P
Gene ID & Species: AT1G80270 (Arabidopsis thaliana)
Edited Gene(s): rps3
Editing Type(s): C-to-U (6)
Publication(s): [1] The involvement of a PPR protein of the P subfamily in partial RNA editing of an Arabidopsis mitochondrial transcript, Gene, 2010. [PMID=20117193]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT1G80270 Mitochondrion rps3 1344 CDS C-to-U AGC=>AGU S=>S Synonymous
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
SAIL_367_A06complemented ppr596 mutantComplementationMorphological characters are recoveredNANABudNADirect Sequencing of PCR Products35.00%LowRestored20117193
SAIL_367_A06complemented ppr596 mutantComplementationMorphological characters are recoveredNANALeafNADirect Sequencing of PCR ProductsNAMediumRestored20117193
SAIL_367_A06mutant ppr596T-DNA InsertionT-DNA is inserted at 207 nt upstream of the stop codon of PPR596Knockout; Homozygousppr596 mutants show delayed growth and flowering, and obvious morphological alterations such as curled leavesBudNADirect Sequencing of PCR Products65.00%HighIncreased20117193
SAIL_367_A06mutant ppr596T-DNA InsertionT-DNA is inserted at 207 nt upstream of the stop codon of PPR596Knockout; Homozygousppr596 mutants show delayed growth and flowering, and obvious morphological alterations such as curled leavesLeafNADirect Sequencing of PCR ProductsNAHighIncreased20117193
NAWTNo treatmentNo treatmentNo treatmentNo treatmentBudNADirect Sequencing of PCR Products30.00%LowNone20117193
NAWTNo treatmentNo treatmentNo treatmentNo treatmentLeafNADirect Sequencing of PCR ProductsNAMediumNone20117193
Last update: Jul 2021 (version 1.0)