OCP3 - Plant Editosome Database - BIG Data Center

Summary

Editing Factor: OCP3
Synonym: OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
Description: Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. It is expressed in the nucleus, involved in drought tolerance and downregulated upon fungal infection.
Protein Family: Transcription Factor
Subclass: NA
Construct Structure: NA
Gene ID & Species: AT5G11270 (Arabidopsis thaliana)
Edited Gene(s): ndhB    ndhD
Editing Type(s): C-to-U (48)
Publication(s): [1] Mediated Plastid RNA Editing in Plant Immunity, PLOS Pathogens, 2013. [PMID=24204264]

Editing Details

Species Gene ID Organelle Edited Gene Position Region Editing Type Codon Amino Acid Molecular Effect Experiment Details
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 149 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAHighNone24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 467 CDS C-to-U CCA=>CUA P=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAhigh-resolution melting (HRM)NAMediumDecreased24204264
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAsequencing of individual cDNA clones64.00%HighDecreased24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAhigh-resolution melting (HRM)NAHighNone24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAsequencing of individual cDNA clones81.00%HighNone24204264
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAHighNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 586 CDS C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAPoisoned Primer Extension (PPE) Assay72.00%HighSimilar24204264
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAsequencing of individual cDNA clones77.00%HighSimilar24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAPoisoned Primer Extension (PPE) Assay88.00%HighNone24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAsequencing of individual cDNA clones86.00%HighNone24204264
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAHighNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Col-0P. cucumerina inoculation (24h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 746 CDS C-to-U UCU=>UUU S=>F Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAPoisoned Primer Extension (PPE) Assay89.00%HighSimilar24204264
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAsequencing of individual cDNA clones71.00%HighSimilar24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAPoisoned Primer Extension (PPE) Assay95.00%HighNone24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAsequencing of individual cDNA clones92.00%HighNone24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAsequencing of individual cDNA clones94.00%HighNone24204264
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAHighNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNAHighDecreased24204264
Col-0P. cucumerina inoculation (24h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24hNANALeaf5 weeksRT-PCR bulk sequencingNAHighDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNAHighDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 830 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAHighNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Col-0P. cucumerina inoculation (24h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 836 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAPoisoned Primer Extension (PPE) Assay55.00%MediumDecreased24204264
NAocp3T-DNA InsertionNAHomozygousImpaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistanceLeafNAsequencing of individual cDNA clones61.00%HighDecreased24204264
Col-0Col-0No treatmentNo treatmentNo treatmentNo treatmentLeafNAPoisoned Primer Extension (PPE) Assay72.00%HighNone24204264
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Col-0P. cucumerina inoculation (24h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 872 CDS C-to-U UCA=>UUA S=>L Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Col-0P. cucumerina inoculation (24h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhB 1255 CDS C-to-U CAU=>UAU H=>Y Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAHighNone24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Arabidopsis thaliana AT5G11270 Chloroplast ndhD 2 CDS C-to-U ACG=>AUG T=>M Recoding
Experiment Details
Genotype (Ecotype) Allele Treatment Treatment Detail Mutant Type Phenotype Tissue Development Stage Detection Method Editing Frequency Editing Extent Mutant Effect PMID
Col-0P. cucumerina inoculation (0h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumNone24204264
Col-0P. cucumerina inoculation (12h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumSimilar24204264
Col-0P. cucumerina inoculation (24h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24hNANALeaf5 weeksRT-PCR bulk sequencingNAMediumDecreased24204264
Col-0P. cucumerina inoculation (48h)InoculationCol-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48hNANALeaf5 weeksRT-PCR bulk sequencingNALowDecreased24204264
Last update: Jul 2021 (version 1.0)