Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
149 |
CDS |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | None | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
467 |
CDS |
C-to-U |
CCA=>CUA |
P=>L |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | high-resolution melting (HRM) | NA | Medium | Decreased | 24204264 | NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | sequencing of individual cDNA clones | 64.00% | High | Decreased | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | high-resolution melting (HRM) | NA | High | None | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | sequencing of individual cDNA clones | 81.00% | High | None | 24204264 | Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
586 |
CDS |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | Poisoned Primer Extension (PPE) Assay | 72.00% | High | Similar | 24204264 | NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | sequencing of individual cDNA clones | 77.00% | High | Similar | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | Poisoned Primer Extension (PPE) Assay | 88.00% | High | None | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | sequencing of individual cDNA clones | 86.00% | High | None | 24204264 | Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (24h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
746 |
CDS |
C-to-U |
UCU=>UUU |
S=>F |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | Poisoned Primer Extension (PPE) Assay | 89.00% | High | Similar | 24204264 | NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | sequencing of individual cDNA clones | 71.00% | High | Similar | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | Poisoned Primer Extension (PPE) Assay | 95.00% | High | None | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | sequencing of individual cDNA clones | 92.00% | High | None | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | sequencing of individual cDNA clones | 94.00% | High | None | 24204264 | Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (24h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
830 |
CDS |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (24h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
836 |
CDS |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | Poisoned Primer Extension (PPE) Assay | 55.00% | Medium | Decreased | 24204264 | NA | ocp3 | T-DNA Insertion | NA | Homozygous | Impaired in NDH activity, but chloroplast NDH activity-defective mutants show enhanced disease resistance | Leaf | NA | sequencing of individual cDNA clones | 61.00% | High | Decreased | 24204264 | Col-0 | Col-0 | No treatment | No treatment | No treatment | No treatment | Leaf | NA | Poisoned Primer Extension (PPE) Assay | 72.00% | High | None | 24204264 | Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (24h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
872 |
CDS |
C-to-U |
UCA=>UUA |
S=>L |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (24h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhB
|
1255 |
CDS |
C-to-U |
CAU=>UAU |
H=>Y |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | High | None | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 |
|
Arabidopsis thaliana |
AT5G11270 |
Chloroplast |
ndhD
|
2 |
CDS |
C-to-U |
ACG=>AUG |
T=>M |
Recoding |
|
Experiment Details
Genotype (Ecotype) |
Allele |
Treatment |
Treatment Detail |
Mutant Type |
Phenotype |
Tissue |
Development Stage |
Detection Method |
Editing Frequency |
Editing Extent |
Mutant Effect |
PMID |
Col-0 | P. cucumerina inoculation (0h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 0h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | None | 24204264 | Col-0 | P. cucumerina inoculation (12h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 12h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Similar | 24204264 | Col-0 | P. cucumerina inoculation (24h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 24h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Medium | Decreased | 24204264 | Col-0 | P. cucumerina inoculation (48h) | Inoculation | Col-0 plants are Inoculated with the fungal pathogen P. cucumerina for 48h | NA | NA | Leaf | 5 weeks | RT-PCR bulk sequencing | NA | Low | Decreased | 24204264 |
|