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2019nCoVR
2019 Novel Coronavirus Resource

Genome Data Submission
FTP Download
Retrieve Sequences
Genome Data Submission FTP Download Retrieve Sequences
Adding 7 genome sequences from GISAID,GenBank on Feb 22, 2020. 2019 Novel Coronavirus Resource was published in YiChuan. Five complete genome sequences of 2019-nCoV submitted by Institute of Pathogen Biology, Chinese Academy of Medical Sciences & Peking Union Medical College have been shared with NCBI (accession numbers MT019529~MT019533) through China National Center for Bioinformation (CNCB)/National Genomics Data Center (NGDC).

Data Release Statistics
Release Notes
Last update: 2020-02-22 14:03:03

37919
Coronaviruses Sequences
203
Isolates
211
Sequences
78
Submitting Labs
77
Originating Labs
36
Locations
World China Increase curve

Released Genome Sequences

Note: Not including GISAID sequences in Download Sequences
Virus Strain Name Accession ID Data Source Related ID Nuc.Completeness Host Sample Collection Date Location Originating Lab Submission Date Submitting Lab Create Date

NCBI Sequences of Coronaviridae

2019-nCoV All Sequences Complete Genome Sequences Complete Genome Sequences Infecting Humans

Authority

Chinese Center for Disease Control and Prevention World Health Organization (WHO) US Centers for Disease Control and Prevention CHINA NEWS

Science Knowledge

Coronaviruses 2019-nCoVR SARS Coronavirus MERS Coronavirus

Related Literature

2019-nCoV (PubMed) Coronaviruses (PubMed) 2019-nCoV (EuropePMC) Coronavirus Knowledge Service Platform

Funding Support

This work was developed and maintained by China National Center for Bioinformation (CNCB) / National Genomics Data Center (NGDC), and supported by the Genomics Data Center Construction of Chinese Academy of Sciences (0202), the 13th Five-year Informatization Plan of Chinese Academy of Sciences (No. XXH13505-05), the Strategic Priority Research Program of the Chinese Academy of Sciences (XDA08020102), the Youth Innovation Promotion Association of Chinese Academy of Sciences and CAS Key Technology Talent Program.

Contact Us

China National Center for Bioinformation (CNCB) / Beijing Institute of Genomics, Chinese Academy of Sciences (BIG)
National Gemomics Data Center (NGDC) / BIG Data Center (BIGD)
Email: GWH@big.ac.cn Telephone: +86 (10) 8409-7340 Fax: +86 (10) 8409-7200
Address: No.1 Beichen West Road, Chaoyang District, Beijing 100101, China

Release Notes
Content Accession Release Date Update date
About Released Genome Sequences

Genome sequences derived from different resources worldwide (NCBI, GISAID, NGDC, NMDC, CNGB) are integrated and curated based on the meta data and sequence alignment results, and this table is daily updated.

Related ID: A genome sequence may be submitted to more than one database. Redundancies are identified based on meta information, sequence alignment, or the report by data submitters. We preferentially provide genome information (“accession id” and “virus name”) of the database which are publicly open to all users. Accordingly, the accession ids of other databases are listed in “Related ID”.
Download: The meta information could be downloaded by all users, while only sequences that at originally public are available. GISAID allows sequence accessibility by the registered users, and therefore their sequences are not provided.
Nuc.Completeness
Partial/gene level: gene sequence
Partial/scaffold level: long stretches of “N”s are present in multiple places of the genome sequence
Complete: The sequence length is equal to or close to the reference genome MN908947, and the sequence does not have long stretches of “N”s. Also, we provide additional information including the number of “N” and degenerate bases, low coverage, multiple gaps when aligned to reference, indicating that the sequence may have issues of quality due to low coverage/depth/technical issues. Some sequences may have high number of SNVs (>15 SNVs) and high SNV density, which should be noted by the users and checked whether there are quality issues.