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GenBank ID | NM_001064128 |
Alias | NYC3 |
Organism | Rice (Oryza sativa) |
Taxonomic identifier | [NCBI] |
Function category | Chlorophyll degradation |
Effect for Senescence | promote |
Gene Description | NYC3 encodes a plastid-localizing alpha/beta hydrolase-fold family protein with an esterase/lipase motif |
Evidence | Genetic evidence:Mutant [Ref 1] |
References | 1: Morita R, Sato Y, Masuda Y, Nishimura M, Kusaba MDefect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice.Plant J. 2009 Sep;59(6):940-52 |
Sequence | NM_001064128.1 | mRNA | CDS | Protein
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Mutant name |
nyc3 |
Mutant/Transgenic |
mutant |
Ecotype |
rice (O. sativa L. cv Nipponbare) |
Mutagenesis type |
EMS |
miRNA Interaction | |
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Details | | target: NM_001064128 miRNA: osa-miR2105 miRNA: osa-miR2105 mfe: -20.8 kcal/mol p-value: 0.056584
position: 1114 target 5' C C U 3' UG AUCAUUUGCAUC CA AC UAGUAAGUGUAG GU miRNA 3' U U U U 5'
target: NM_001064128 miRNA: osa-miR2871a miRNA: osa-miR2871a mfe: -21.4 kcal/mol p-value: 0.120694
position: 1434 target 5' G U A U 3' GUG AUCA GGGAGCUGGAAU CAC UGGU UCUUUGAUUUUA miRNA 3' A U 5'
target: NM_001064128 miRNA: osa-miR2871b miRNA: osa-miR2871b mfe: -21.4 kcal/mol p-value: 0.110998
position: 1434 target 5' G U A U 3' GUG AUCA GGGAGCUGGAAU CAC UGGU UCUUUGAUUUUA miRNA 3' A U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_149715 | |
Cross Link | |
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