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Locus name | LOC_Os01g66120 |
Organism | Rice (Oryza sativa) |
Taxonomic identifier | [NCBI] |
Function category | Transcription regulation:NAC |
Effect for Senescence | Unclear |
Gene Description | NAC-domain containing protein 2, putative, expressed |
Evidence | Molecular evidence: SSH, Northern blot and RT-PCR [Ref 1] |
References | 1: Liu L, Zhou Y, Zhou G, Ye R, Zhao L, Li X, Lin YIdentification of early senescence-associated genes in rice flag leaves.Plant Mol. Biol. 2008 May;67(1-2):37-55 |
Gene Ontology | |
Sequence | LOC_Os01g66120.1 | Genomic | mRNA | CDS | Protein
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miRNA Interaction | |
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Details | | target: LOC_Os01g66120 miRNA: osa-miR1424 miRNA: osa-miR1424 mfe: -25.5 kcal/mol p-value: 0.030900
position: 1336 target 5' U G G 3' GCAAUU GCAUCGG GUG CAU UGUUAG CGUAGUC CAC GUA miRNA 3' U A 5'
target: LOC_Os01g66120 miRNA: osa-miR160a miRNA: osa-miR160a mfe: -37.2 kcal/mol p-value: 0.004410
position: 1405 target 5' C U 3' GGUAUACAGGGGGCUAG C CCGUAUGUCCCUCGGUC G miRNA 3' A C U 5'
target: LOC_Os01g66120 miRNA: osa-miR160b miRNA: osa-miR160b mfe: -37.2 kcal/mol p-value: 0.004601
position: 1405 target 5' C U 3' GGUAUACAGGGGGCUAG C CCGUAUGUCCCUCGGUC G miRNA 3' A C U 5'
target: LOC_Os01g66120 miRNA: osa-miR160c miRNA: osa-miR160c mfe: -37.2 kcal/mol p-value: 0.003479
position: 1405 target 5' C U 3' GGUAUACAGGGGGCUAG C CCGUAUGUCCCUCGGUC G miRNA 3' A C U 5'
target: LOC_Os01g66120 miRNA: osa-miR160d miRNA: osa-miR160d mfe: -37.2 kcal/mol p-value: 0.004117
position: 1405 target 5' C U 3' GGUAUACAGGGGGCUAG C CCGUAUGUCCCUCGGUC G miRNA 3' A C U 5'
target: LOC_Os01g66120 miRNA: osa-miR160e miRNA: osa-miR160e mfe: -37.7 kcal/mol p-value: 0.004280
position: 1404 target 5' U U 3' CGGUAUACAGGGGGCUAG C GCCGUAUGUCCCUCGGUC G miRNA 3' C U 5'
target: LOC_Os01g66120 miRNA: osa-miR160f miRNA: osa-miR160f mfe: -32.6 kcal/mol p-value: 0.012284
position: 1405 target 5' C A U 3' GGUAU CAGGGGGCUAG C CCGUA GUCCCUCGGUC G miRNA 3' A A C U 5'
target: LOC_Os01g66120 miRNA: osa-miR1846a-5p miRNA: osa-miR1846a-5p mfe: -36.7 kcal/mol p-value: 0.010710
position: 249 target 5' C U G C C 3' GC GC CCGGCCUCC CAU CG CG GGCCGGAGG GUG miRNA 3' U C G A A 5'
target: LOC_Os01g66120 miRNA: osa-miR1846b-5p miRNA: osa-miR1846b-5p mfe: -36.7 kcal/mol p-value: 0.013267
position: 249 target 5' C U G C C 3' GC GC CCGGCCUCC CAU CG CG GGCCGGAGG GUG miRNA 3' U C G A A 5'
target: LOC_Os01g66120 miRNA: osa-miR1846c-5p miRNA: osa-miR1846c-5p mfe: -36.7 kcal/mol p-value: 0.014205
position: 249 target 5' C U G C C 3' GC GC CCGGCCUCC CAU CG CG GGCCGGAGG GUG miRNA 3' U C G A A 5'
target: LOC_Os01g66120 miRNA: osa-miR1850 miRNA: osa-miR1850 mfe: -23.3 kcal/mol p-value: 0.013507
position: 1220 target 5' U G A 3' GGAUU GAU UGGAUUAGACAG UCUAA CUA ACUUGAUUUGUC miRNA 3' U C 5'
target: LOC_Os01g66120 miRNA: osa-miR1857-5p miRNA: osa-miR1857-5p mfe: -25.4 kcal/mol p-value: 0.053853
position: 1045 target 5' U A C U 3' CCUCAUGU CUGGGG AAGCCA GGAGUACG GGUUUU UUUGGU miRNA 3' A 5'
target: LOC_Os01g66120 miRNA: osa-miR1884a miRNA: osa-miR1884a mfe: -25.8 kcal/mol p-value: 0.049576
position: 689 target 5' G C C G G 3' GUGAG AG G CGGCGGCGUC CA UACUU UU C GUUGCCGCAG GU miRNA 3' A U 5'
target: LOC_Os01g66120 miRNA: osa-miR2104 miRNA: osa-miR2104 mfe: -36.7 kcal/mol p-value: 0.012655
position: 252 target 5' U G C A C 3' GCGC C GC UCCCC UCGCCGU UGCG G CG AGGGG AGCGGCG miRNA 3' G A U 5'
target: LOC_Os01g66120 miRNA: osa-miR319a miRNA: osa-miR319a mfe: -30.9 kcal/mol p-value: 0.009957
position: 924 target 5' U A C 3' GGGAGCGC CCUUC G CCA CCCUCGUG GGAAG C GGU miRNA 3' U A U 5'
target: LOC_Os01g66120 miRNA: osa-miR319b miRNA: osa-miR319b mfe: -30.9 kcal/mol p-value: 0.012464
position: 924 target 5' U A C 3' GGGAGCGC CCUUC G CCA CCCUCGUG GGAAG C GGU miRNA 3' U A U 5'
target: LOC_Os01g66120 miRNA: osa-miR531b miRNA: osa-miR531b mfe: -34.6 kcal/mol p-value: 0.029173
position: 985 target 5' C U C G C 3' CGGC C G CGGCCUCGGCGG GCCG G C GUCGGGGCCGCU miRNA 3' U C 5'
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Ortholog Group | |
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Ortholog Groups: OG5_135169 | |
Cross Link | |
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