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Locus name | AT5G13800 |
Alias | PPH |
Organism | Arabidopsis thaliana |
Taxonomic identifier | [NCBI] |
Function category | Chlorophyll degradation |
Effect for Senescence | promote |
Gene Description | Hydrolase, alpha/beta fold family protein |
Evidence | Genetic evidence:Mutant [Ref 1] |
References | 1: Schelbert S, Aubry S, Burla B, Agne B, Kessler F, Krupinska K, H_rtensteiner SPheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis.Plant Cell 2009 Mar;21(3):767-85 |
Sequence | AT5G13800.1 | Genomic | mRNA | CDS | Protein AT5G13800.2 | Genomic | mRNA | CDS | Protein
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Mutated 1 | Mutant name |
pph-1 | Mutant/Transgenic |
mutant | Ecotype |
Col-0 |
Mutagenesis type |
T-DNA insertion_knock out |
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Mutated 2 | Mutant name |
35S-PPH-GFP | Mutant/Transgenic |
transgenic | Ecotype |
Col-0 |
Mutagenesis type |
transgene |
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Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ. Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis. Plant J. 2005 May;42(4) |
Comparation |
Legends: Col: wild type, indicates the ratio of expression in senescing leaves/green leaves. NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type. D/L: ratio of DARK 5d/control. CD: Cell Death, ratio of starved cell suspension culture/control. Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction | |
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Details | | target: AT5G13800.1 miRNA: ath-miR390a miRNA: ath-miR390a mfe: -30.6 kcal/mol p-value: 0.011648
position: 525 target 5' C U U 3' GGUGUUG UUCUUCCUG GCUU CCGCGAU AGGGAGGAC CGAA miRNA 3' U 5'
target: AT5G13800.1 miRNA: ath-miR390b miRNA: ath-miR390b mfe: -30.6 kcal/mol p-value: 0.012970
position: 525 target 5' C U U 3' GGUGUUG UUCUUCCUG GCUU CCGCGAU AGGGAGGAC CGAA miRNA 3' U 5'
target: AT5G13800.1 miRNA: ath-miR774 miRNA: ath-miR774 mfe: -26.2 kcal/mol p-value: 0.012217
position: 1533 target 5' U C A U 3' GUGGUUAUAUGGGU A ACUA UACCGGUAUACCCA U UGGU miRNA 3' C U 5'
target: AT5G13800.2 miRNA: ath-miR390a miRNA: ath-miR390a mfe: -30.6 kcal/mol p-value: 0.010857
position: 427 target 5' C U U 3' GGUGUUG UUCUUCCUG GCUU CCGCGAU AGGGAGGAC CGAA miRNA 3' U 5'
target: AT5G13800.2 miRNA: ath-miR390b miRNA: ath-miR390b mfe: -30.6 kcal/mol p-value: 0.012133
position: 427 target 5' C U U 3' GGUGUUG UUCUUCCUG GCUU CCGCGAU AGGGAGGAC CGAA miRNA 3' U 5'
target: AT5G13800.2 miRNA: ath-miR774 miRNA: ath-miR774 mfe: -26.2 kcal/mol p-value: 0.011505
position: 1435 target 5' U C A U 3' GUGGUUAUAUGGGU A ACUA UACCGGUAUACCCA U UGGU miRNA 3' C U 5'
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Ortholog Group | |
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Ortholog Groups: OG5_149715 | |
Cross Link | |
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Mutant Image | |
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leaves of pph mutant (SALK_024673C) still exhibited yellowing which is different from previous report by (PubMed ID:19304936)(SALK_000095) | |
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