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| Locus name | AT4G13250 |
| Alias | NYC1 |
| Organism | Arabidopsis thaliana |
| Taxonomic identifier | [NCBI] |
| Function category | Chlorophyll degradation |
| Effect for Senescence | promote |
| Gene Description | Encodes a chlorophyll b reductase involved in the degradation of chlorophyll b and LHCII (light harvesting complex II). |
| Evidence | Molecular evidence: SSH and Northern [Ref 1] |
| References | 1: Gepstein S, Sabehi G, Carp MJ, Hajouj T, Nesher MF, Yariv I, Dor C, Bassani MLarge-scale identification of leaf senescence-associated genes.Plant J. 2003 Dec;36(5):629-42 |
| Gene Ontology | |
| Sequence | AT4G13250.1 | Genomic | mRNA | CDS | Protein
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| Mutant name |
35S-NYC1-GFP |
| Mutant/Transgenic |
transgenic |
| Ecotype |
Col-0 |
| Mutagenesis type |
transgene |
|
| Sampling |
Buchanan-Wollaston V, Page T, Harrison E, Breeze E, Lim PO, Nam HG, Lin JF, Wu SH, Swidzinski J, Ishizaki K, Leaver CJ.
Comparative transcriptome analysis reveals significant differences in gene expression and signalling pathways between developmental and dark/starvation-induced senescence in Arabidopsis.
Plant J. 2005 May;42(4) |
| Comparation |
Legends:
Col: wild type, indicates the ratio of expression in senescing leaves/green leaves.
NahG, coi1 and ein2: indicates the ratio of expression in senescing leaves of mutant/senescing wild type.
D/L: ratio of DARK 5d/control.
CD: Cell Death, ratio of starved cell suspension culture/control.
Genes showing at least 3 fold (ratio) up regulation during leaf senescence. |
miRNA Interaction  | |
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| Details | | target: AT4G13250.1
miRNA: ath-miR156a
miRNA: ath-miR156a
mfe: -25.2 kcal/mol
p-value: 0.031609
position: 1600
target 5' C U U G 3'
UGUUU CUCUCU UCUGUU
ACGAG GAGAGA AGACAG
miRNA 3' C U U 5'
target: AT4G13250.1
miRNA: ath-miR156b
miRNA: ath-miR156b
mfe: -25.2 kcal/mol
p-value: 0.034328
position: 1600
target 5' C U U G 3'
UGUUU CUCUCU UCUGUU
ACGAG GAGAGA AGACAG
miRNA 3' C U U 5'
target: AT4G13250.1
miRNA: ath-miR156c
miRNA: ath-miR156c
mfe: -25.2 kcal/mol
p-value: 0.023708
position: 1600
target 5' C U U G 3'
UGUUU CUCUCU UCUGUU
ACGAG GAGAGA AGACAG
miRNA 3' C U U 5'
target: AT4G13250.1
miRNA: ath-miR156d
miRNA: ath-miR156d
mfe: -25.2 kcal/mol
p-value: 0.032345
position: 1600
target 5' C U U G 3'
UGUUU CUCUCU UCUGUU
ACGAG GAGAGA AGACAG
miRNA 3' C U U 5'
target: AT4G13250.1
miRNA: ath-miR156e
miRNA: ath-miR156e
mfe: -25.2 kcal/mol
p-value: 0.027013
position: 1600
target 5' C U U G 3'
UGUUU CUCUCU UCUGUU
ACGAG GAGAGA AGACAG
miRNA 3' C U U 5'
target: AT4G13250.1
miRNA: ath-miR156f
miRNA: ath-miR156f
mfe: -25.2 kcal/mol
p-value: 0.031382
position: 1600
target 5' C U U G 3'
UGUUU CUCUCU UCUGUU
ACGAG GAGAGA AGACAG
miRNA 3' C U U 5'
target: AT4G13250.1
miRNA: ath-miR156g
miRNA: ath-miR156g
mfe: -26.3 kcal/mol
p-value: 0.018892
position: 1600
target 5' C U U U 3'
UGUUU CUCUCUU CUGUUG
ACGAG GAGAGAA GACAGC
miRNA 3' C U 5'
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| Ortholog Group | |
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| Ortholog Groups: OG5_136329 | |
| Cross Link | |
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| Localization | cytosol |
| Evidence | SUBAcon |
| Pubmed ID | 23180787 |
