Genome Warehouse

Scientific Name: Kandelia obovata
Common Names: -
Bioproject: PRJCA002330
Biosample: SAMC141139
Accession No.: GWHACBH00000000
GWH reannotation accession: -
GSA raw reads: CRR120126, CRR120127
GVM variations of the species: -
Submitter Organization: Forestry College, Fujian Agriculture and Forestry University
Contact: Zou Shuang-Quan, zbaolifafu@126.com
Sequence author(s): Zou Shuang-Quan, Hu Min-Jie, Sun Wei-Hong
Released Date: 2020-03-10
Assembly Level: Draft genome in contig level
Genome Representation: Full Genome
Assembly method: SOAPdenovo 2.0
Sequencing & coverage: PacBio 117.92
Download: DNA GFF RNA Protein
Publication(s): Min-Jie Hu, et al. Chromosome-scale assembly of the Kandelia obovata genome. Horticulture Research. 2020, 7: 75.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHACBH00000000	-	ko01	Draft genome in contig level	2020-03-10	DNA GFF RNA Protein
GWHACBH00000000.1	-	Kandelia candel	Draft genome in chromosome level	2021-06-23	DNA GFF RNA Protein

Genome size (bp)	177,986,124
GC content	35.10%
Contig sequence No.	74
Maximum contig sequence length (bp)	13,452,090
Minimum contig sequence length (bp)	36,331
Average contig sequence length (bp)	2,405,218
Contig N50 (bp)	5,743,053
Contig N90 (bp)	2,939,642

Annotation of Whole Genome Assembly

	Protein	Total
Total	19,138	19,138