- Scientific Name
- Megacarpaea delavayi
- Common Names
- -
- Bioproject
- PRJCA002887
- Biosample
- SAMC195202
- Accession No.
- GWHANWI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- College of Life Sciences, Sichuan University
- Contact
- Qiao Yang, 1095257894@qq.com
- Sequence author(s)
- Qiao Yang
- Released Date
- 2020-10-23
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- Platanus v1.0
- Sequencing & coverage
- Illumina HiSeq 2500 115.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Qiao Yang, et al. The Genome Sequence of Alpine Megacarpaea delavayi Identifies Species-Specific Whole-Genome Duplication. Frontiers in Genetics. 2020, 11: 812.
Statistics of Genome Assembly
| Genome size (bp) | 819,102,343 |
| GC content | 39.58% |
| Scaffold sequence No. | 286,039 |
| Maximum scaffold sequence length (bp) | 794,130 |
| Minimum scaffold sequence length (bp) | 200 |
| Average scaffold sequence length (bp) | 2,864 |
| Scaffold N50 (bp) | 74,620 |
| Scaffold N90 (bp) | 817 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 43,650 | 34 | 43,684 |