- Scientific Name
- Aurantiochytrium limacinum
- Common Names
- Schizochytrium limacinum
- Bioproject
- PRJCA002304
- Biosample
- SAMC139532
- Accession No.
- GWHABLD00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Fujian Normal University, Fujian Normal University
- Contact
- Ting Xue, xueting@fjnu.edu.cn
- Sequence author(s)
- Ting Xue
- Released Date
- 2020-12-08
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Canu 1.6
- Sequencing & coverage
- PacBio 150.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Limin Liang, et al. Genome and Transcriptome Analyses Provide Insight Into the Omega-3 Long-Chain Polyunsaturated Fatty Acids Biosynthesis of Schizochytrium limacinum SR21. Frontiers in Microbiology. 2020, 11: 687.
Statistics of Genome Assembly
| Genome size (bp) | 63,006,391 |
| GC content | 44.99% |
| Scaffold sequence No. | 52 |
| Maximum scaffold sequence length (bp) | 4,017,426 |
| Minimum scaffold sequence length (bp) | 9,409 |
| Average scaffold sequence length (bp) | 1,211,661 |
| Scaffold N50 (bp) | 2,674,831 |
| Scaffold N90 (bp) | 1,478,357 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 6,834 | 6,834 |