- Scientific Name
- Brassica napus
- Common Names
- oilseed rape, rapeseeds; rape;
- Bioproject
- PRJCA002883
- Biosample
- SAMC195200
- Accession No.
- GWHANRE00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- 19,435,228 (SNP), 6,355,636 (Indel)
- Submitter Organization
- College of Agriculture, Fujian Agriculture and Forestry University
- Contact
- Xuequn Chen, cxq815@126.com
- Sequence author(s)
- Xuequn Chen
- Released Date
- 2020-07-01
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu July-2018
- Sequencing & coverage
- PacBio 100.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xuequn Chen, et al. A high‐quality Brassica napus genome reveals expansion of transposable elements, subgenome evolution and disease resistance. Plant Biotechnology Journal. 2020, 19(3): 615-30.
Statistics of Genome Assembly
| Genome size (bp) | 921,538,825 |
| GC content | 36.92% |
| Chromosomes sequence No. | 19 |
| Genome sequence No. | 1,403 |
| Maximum genome sequence length (bp) | 76,295,932 |
| Minimum genome sequence length (bp) | 1,000 |
| Average genome sequence length (bp) | 656,835 |
| Genome sequence N50 (bp) | 53,202,368 |
| Genome sequence N90 (bp) | 22,827,058 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Chromosome | 118,983 | 118,983 |
| Others | 628 | 628 |
| Total | 119,611 | 119,611 |
Annotation Details
| ChrID | Protein | Total |
|---|---|---|
| chrA1 | 5,113 | 5,113 |
| chrA10 | 3,596 | 3,596 |
| chrA2 | 5,162 | 5,162 |
| chrA3 | 7,267 | 7,267 |
| chrA4 | 3,644 | 3,644 |
| chrA5 | 4,701 | 4,701 |
| chrA6 | 4,910 | 4,910 |
| chrA7 | 4,910 | 4,910 |
| chrA8 | 3,848 | 3,848 |
| chrA9 | 7,101 | 7,101 |
| chrC1 | 6,891 | 6,891 |
| chrC2 | 7,535 | 7,535 |
| chrC3 | 10,287 | 10,287 |
| chrC4 | 8,208 | 8,208 |
| chrC5 | 7,066 | 7,066 |
| chrC6 | 6,064 | 6,064 |
| chrC7 | 7,229 | 7,229 |
| chrC8 | 7,043 | 7,043 |
| chrC9 | 8,408 | 8,408 |
| Others | 628 | 628 |
| Total | 119,611 | 119,611 |