Genome Warehouse

Scientific Name: Cervus nippon
Common Names: sika deer;
Bioproject: PRJCA001220
Biosample: SAMC055341
Accession No.: GWHANOY00000000
GWH reannotation accession: -
GSA raw reads: CRR078380
GVM variations of the species: -
Submitter Organization: Technology of omics reseach center, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Contact: Cheng Ai, aicheng@caas.cn
Sequence author(s): Jue Ruan, Xiumei Xing, Cheng Ai
Released Date: 2021-09-28
Assembly Level: Draft genome in chromosome level
Genome Representation: Full Genome
Assembly method: wtdbg 1.1.006
Sequencing & coverage: PacBio 57.7
Download: DNA GFF RNA Protein
Publication(s): Ranran Zhang, et al. Comparative antler proteome of sika deer from different developmental stages. Scientific Reports. 2021, 11.

Assembly Accession	GWH Reannotation Accession	Assembly Name	Assembly Level	Released Date	Download Files
GWHANOY00000000	-	mhl_v1.0	Draft genome in chromosome level	2021-09-28	DNA GFF RNA Protein

Genome size (bp)	2,500,646,934
GC content	41.62%
Genome sequence No.	588
Maximum genome sequence length (bp)	143,481,735
Minimum genome sequence length (bp)	2,912
Average genome sequence length (bp)	4,252,801
Genome sequence N50 (bp)	78,786,809
Genome sequence N90 (bp)	49,061,596

Annotation of Whole Genome Assembly

	Protein	Total
Total	21,449	21,449