Scientific Name
Fragaria nilgerrensis
Common Names
-
Bioproject
PRJCA002135
Biosample
SAMC131412
Accession No.
GWHABKC00000000
Submitter Organization
College of Horticulture, Shenyang Agricultural University
Contacts
Junxiang Zhang, jxzhang@syau.edu.cn
Released Date
2020-02-01
Assembly Level
Draft genome in scaffold level
Genome Representation
Full Genome
Reference Genome
yes
Assembly method
Falcon 3.0
Canu 1.5
Sequencing & coverage
PacBio 56.0
Download
DNA GFF RNA Protein
Publication(s)
Junxiang Zhang, et al. The high-quality genome of diploid strawberry (Fragaria nilgerrensis) provides new insights into anthocyanin accumulation. Plant Biotechnology Journal. 2020.
Assembly Accession Assembly Name Assembly Level Release Date Download Files
GWHABKC00000000 The Fragaria nilgerrensis genome from Yunnan Draft genome in scaffold level 2020-02-01 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 270,303,299
GC content 38.54%
Chromosomes sequence No. 7
Scaffold sequence No. 257
Maximum scaffold sequence length (bp) 50,640,243
Minimum scaffold sequence length (bp) 18,201
Average scaffold sequence length (bp) 1,051,764
Scaffold N50 (bp) 38,307,961
Scaffold N90 (bp) 23,353,033
Annotation of Whole Genome Assembly
Protein Total
Chromosome 27,491 27,491
Others 1,289 1,289
Total 28,780 28,780
Annotation Details
ChrID Protein Total
chr1 2,443 2,443
chr2 4,019 4,019
chr3 4,527 4,527
chr4 3,820 3,820
chr5 3,793 3,793
chr6 5,505 5,505
chr7 3,384 3,384
Others 1,289 1,289
Total 28,780 28,780