- Scientific Name
- Serratia marcescens
- Common Names
- Bacillus marcescens, Serratia marcescens subsp. marcescens, Serratia marcescens subsp. sakuensis
- Bioproject
- PRJCA002052
- Biosample
- SAMC125242
- Accession No.
- GWHABJP00000000
- GWH reannotation accession
- GWHRA_ABJP00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Institute of Tropical Bioscience and Biotechnology, Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences
- Contact
- Deguan Tan, tandeguan@itbb.org.cn
- Sequence author(s)
- Deguan Tan, Jiaming Zhang, Lili Fu, Xuepiao Sun
- Released Date
- 2020-06-18
- Assembly Level
- Complete genome
- Genome Representation
- Full Genome
- Assembly method
- SOAP denovo 2020-12-22
- Sequencing & coverage
- Illumina HiSeq 3000 100.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s)
- Deguan Tan, et al. Genetic Analysis and Immunoelectron Microscopy of Wild and Mutant Strains of the Rubber Tree Endophytic Bacterium Serratia marcescens Strain ITBB B5–1 Reveal Key Roles of a Macrovesicle in Storage and Secretion of Prodigiosin. Journal of Agriculture and Food Chemistry. 2020, 68:5606-5615.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABJP00000000 | GWHRA_ABJP00000000.1 | B5-1mu genome | Complete genome | 2020-06-18 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,079,891 |
| GC content | 59.76% |
| Chromosomes sequence No. | 1 |
Statistics of Genome Assembly
| Genome size (bp) | 5,079,891 |
| GC content | 59.76% |
| Chromosomes sequence No. | 1 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 4,693 | 89 | 22 | 8 | 23 | 23 | 4,858 |