- Scientific Name
- Altica viridicyanea
- Common Names
- -
- Bioproject
- PRJCA002780
- Biosample
- SAMC191548
- Accession No.
- GWHAMMQ00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR143524
- GVM variations of the species
- -
- Submitter Organization
- RNA Key labrotary, Institute of Biophysics, Chinese Academy of Sciences
- Contact
- Yiwei Niu, xiaohuwangwang@qq.com
- Sequence author(s)
- Huaijun Xue, Yiwei Niu, Kari A. Segraves, Ruie Nie, Yajing Hao, Lili Zhang, Xinchao Cheng, Xuewen Zhang, Jing Wei, Wenzhu Li, Runsheng Chen, Xingke Yang
- Released Date
- 2020-07-03
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- Flye 2.3.5b
Redundans 0.14a
SSPACE-Long 1.1 - Sequencing & coverage
- Illumina HiSeq 2500 187.28
PacBio 72.77 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Huai-Jun Xue, et al. The draft genome of the specialist flea beetle Altica viridicyanea (Coleoptera:Chrysomelidae). BMC Genomics. 2021, 22.
Statistics of Genome Assembly
| Genome size (bp) | 864,762,032 |
| GC content | 31.67% |
| Scaffold sequence No. | 4,479 |
| Maximum scaffold sequence length (bp) | 5,674,939 |
| Minimum scaffold sequence length (bp) | 200 |
| Average scaffold sequence length (bp) | 193,070 |
| Scaffold N50 (bp) | 557,265 |
| Scaffold N90 (bp) | 122,770 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Total | 17,719 | 11 | 17,730 |