- Scientific Name
- Haemaphysalis longicornis
- Common Names
- longhorned tick;
- Bioproject
- PRJCA002240
- Biosample
- SAMC136620
- Accession No.
- GWHAMMI00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences
- Contact
- TIGMIC Group, tigmicgroup@gmail.com
- Sequence author(s)
- TIGMIC Group
- Released Date
- 2020-05-29
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- Canu;Falcon;Wtdbg;Smartdenovo V1.7;V1.0;V1.1.006;V1.0
- Sequencing & coverage
- Illumina HiSeqX-Ten 131.9
PacBio 94.9 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Na Jia, et al. Large-Scale Comparative Analyses of Tick Genomes Elucidate Their Genetic Diversity and Vector Capacities. Cell. 2020, 182(5): 1328-1340.e13.
Statistics of Genome Assembly
| Genome size (bp) | 2,554,970,390 |
| GC content | 47.39% |
| Organellas sequence No. | 1 |
| Genome sequence No. | 3,890 |
| Maximum genome sequence length (bp) | 348,261,740 |
| Minimum genome sequence length (bp) | 3,404 |
| Average genome sequence length (bp) | 656,805 |
| Genome sequence N50 (bp) | 204,922,340 |
| Genome sequence N90 (bp) | 1,238,896 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 27,144 | 27,144 |