Scientific Name
Sphingomonas
Common Names
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Bioproject
PRJCA001911
Biosample
SAMC114036
Accession No.
GWHABGO00000000
GWH reannotation accession
GWHRA_ABGO00000000.1
GSA raw reads
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GVM variations of the species
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Submitter Organization
State Key Laboratory of Microbial Metabolism, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China, Shanghai Jiao Tong University
Contact
Shanshan Yang, 1210882010@qq.com
Sequence author(s)
Shanshan Yang
Released Date
2019-11-14
Assembly Level
Draft genome in contig level
Genome Representation
Full Genome
Assembly method
SPAdes 2020/02/29
Sequencing & coverage
Illumina PE150 200.0
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
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Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHABGO00000000 GWHRA_ABGO00000000.1 Sphingomonas formosensis CC-Nfb-2T Draft genome in contig level 2019-11-14 DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 6,899,075
GC content 65.16%
Contig sequence No. 39
Maximum contig sequence length (bp) 1,243,671
Minimum contig sequence length (bp) 1,377
Average contig sequence length (bp) 176,899
Contig N50 (bp) 503,530
Contig N90 (bp) 170,710

Statistics of Genome Assembly

Genome size (bp) 6,899,075
GC content 65.16%
Contig sequence No. 39
Maximum contig sequence length (bp) 1,243,671
Minimum contig sequence length (bp) 1,377
Average contig sequence length (bp) 176,899
Contig N50 (bp) 503,530
Contig N90 (bp) 170,710
Annotation of Whole Genome Assembly
Protein tRNA rRNA Pseudogene Others Total
Total 6,281 46 9 73 55 6,464