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  • Setaria italica
  • Ci846
    • Scientific Name
    Setaria italica
    Common Names
    foxtail millet; Chaetochloa italica, Panicum italicum, Setaria viridis subsp. italica
    Bioproject
    PRJCA001876
    Biosample
    SAMC113349
    Accession No.
    GWHABGL00000000
    GWH reannotation accession
    -
    GSA raw reads
    -
    GVM variations of the species
    25,727,368 (SNP), 4,277,814 (Indel)
    Submitter Organization
    Department of Plant Genetics and Breeding, China Agricultural University
    Contact
    Junpeng Shi, shijunpeng@cau.edu.cn
    Sequence author(s)
    Junpeng Shi
    Released Date
    2019-11-06
    Assembly Level
    Draft genome in chromosome level
    Genome Representation
    Partial Genome
    Assembly method
    HERA V1
    Sequencing & coverage
    PacBio 116.0
    Download
    DNA GFF RNA Protein
    Publication(s)
    -
    Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
    GWHABGL00000000 - Ci846 Draft genome in chromosome level 2019-11-06 DNA GFF RNA Protein

    Statistics of Genome Assembly

    Genome size (bp) 412,048,376
    GC content 46.20%
    Genome sequence No. 98
    Maximum genome sequence length (bp) 58,763,337
    Minimum genome sequence length (bp) 15,296
    Average genome sequence length (bp) 4,204,575
    Genome sequence N50 (bp) 48,994,982
    Genome sequence N90 (bp) 36,604,727
    Annotation of Whole Genome Assembly
    Protein Total
    Total 47,012 47,012