- Scientific Name
- Sphingopyxis sp.
- Common Names
- -
- Bioproject
- PRJCA001854
- Biosample
- SAMC112123
- Accession No.
- GWHABFY00000000
- GWH reannotation accession
- GWHRA_ABFY00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University
- Contact
- Han Wang, wang1990hk@163.com
- Sequence author(s)
- Han Wang
- Released Date
- 2019-10-28
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- IDBA-UD 1.1.1
- Sequencing & coverage
- Illumina HiSeq X Ten 42.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABFY00000000 | GWHRA_ABFY00000000.1 | Mar_E0152_027 | Draft genome in scaffold level | 2019-10-28 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,252,104 |
| GC content | 63.83% |
| Scaffold sequence No. | 194 |
| Maximum scaffold sequence length (bp) | 249,058 |
| Minimum scaffold sequence length (bp) | 1,002 |
| Average scaffold sequence length (bp) | 21,918 |
| Scaffold N50 (bp) | 60,486 |
| Scaffold N90 (bp) | 14,170 |
Statistics of Genome Assembly
| Genome size (bp) | 4,252,104 |
| GC content | 63.83% |
| Scaffold sequence No. | 194 |
| Maximum scaffold sequence length (bp) | 249,058 |
| Minimum scaffold sequence length (bp) | 1,002 |
| Average scaffold sequence length (bp) | 21,918 |
| Scaffold N50 (bp) | 60,486 |
| Scaffold N90 (bp) | 14,170 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 4,137 | 45 | 1 | 53 | 204 | 4,440 |