Scientific Name
Sphingopyxis sp.
Common Names
-
Bioproject
PRJCA001854
Biosample
SAMC112115
Accession No.
GWHABFQ00000000
GWH reannotation accession
GWHRA_ABFQ00000000.1
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
School of Life Sciences and Biotechnology, Shanghai Jiao Tong University
Contact
Han Wang, wang1990hk@163.com
Sequence author(s)
Han Wang
Released Date
2019-10-28
Assembly Level
Draft genome in scaffold level
Genome Representation
Full Genome
Assembly method
IDBA-UD 1.1.1
Sequencing & coverage
Illumina HiSeq X Ten 42.0
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHABFQ00000000 GWHRA_ABFQ00000000.1 Mar_E0152_016 Draft genome in scaffold level 2019-10-28 DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 3,970,843
GC content 63.98%
Scaffold sequence No. 462
Maximum scaffold sequence length (bp) 84,910
Minimum scaffold sequence length (bp) 1,006
Average scaffold sequence length (bp) 8,595
Scaffold N50 (bp) 20,374
Scaffold N90 (bp) 3,804

Statistics of Genome Assembly

Genome size (bp) 3,970,843
GC content 63.98%
Scaffold sequence No. 462
Maximum scaffold sequence length (bp) 84,910
Minimum scaffold sequence length (bp) 1,006
Average scaffold sequence length (bp) 8,595
Scaffold N50 (bp) 20,374
Scaffold N90 (bp) 3,804
Annotation of Whole Genome Assembly
Protein tRNA rRNA Pseudogene Others Total
Total 3,769 45 2 125 471 4,412