Scientific Name
Rhodococcus sp.
Common Names
-
Bioproject
PRJCA001854
Biosample
SAMC112107
Accession No.
GWHABFI00000000
GWH reannotation accession
GWHRA_ABFI00000000.1
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
School of Life Sciences and Biotechnology, Shanghai Jiao Tong University
Contact
Han Wang, wang1990hk@163.com
Sequence author(s)
Han Wang
Released Date
2019-10-28
Assembly Level
Draft genome in scaffold level
Genome Representation
Full Genome
Assembly method
IDBA-UD 1.1.1
Sequencing & coverage
Illumina HiSeq X Ten 42.0
Download
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein
Publication(s)
-
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHABFI00000000 GWHRA_ABFI00000000.1 Mar_E0123_040 Draft genome in scaffold level 2019-10-28 DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein

Statistics of Genome Assembly

Genome size (bp) 4,838,306
GC content 64.94%
Scaffold sequence No. 1,124
Maximum scaffold sequence length (bp) 25,261
Minimum scaffold sequence length (bp) 1,000
Average scaffold sequence length (bp) 4,305
Scaffold N50 (bp) 5,760
Scaffold N90 (bp) 2,076

Statistics of Genome Assembly

Genome size (bp) 4,838,306
GC content 64.94%
Scaffold sequence No. 1,124
Maximum scaffold sequence length (bp) 25,261
Minimum scaffold sequence length (bp) 1,000
Average scaffold sequence length (bp) 4,305
Scaffold N50 (bp) 5,760
Scaffold N90 (bp) 2,076
Annotation of Whole Genome Assembly
Protein tRNA rRNA Pseudogene Others Total
Total 5,211 41 2 62 1,142 6,458