- Scientific Name
- Stenotrophomonas sp.
- Common Names
- -
- Bioproject
- PRJCA001854
- Biosample
- SAMC112103
- Accession No.
- GWHABFE00000000
- GWH reannotation accession
- GWHRA_ABFE00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University
- Contact
- Han Wang, wang1990hk@163.com
- Sequence author(s)
- Han Wang
- Released Date
- 2019-10-28
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- IDBA-UD 1.1.1
- Sequencing & coverage
- Illumina HiSeq X Ten 42.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABFE00000000 | GWHRA_ABFE00000000.1 | Mar_E0123_027 | Draft genome in scaffold level | 2019-10-28 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 5,547,771 |
| GC content | 66.25% |
| Scaffold sequence No. | 295 |
| Maximum scaffold sequence length (bp) | 751,624 |
| Minimum scaffold sequence length (bp) | 1,003 |
| Average scaffold sequence length (bp) | 18,806 |
| Scaffold N50 (bp) | 202,182 |
| Scaffold N90 (bp) | 9,720 |
Statistics of Genome Assembly
| Genome size (bp) | 5,547,771 |
| GC content | 66.25% |
| Scaffold sequence No. | 295 |
| Maximum scaffold sequence length (bp) | 751,624 |
| Minimum scaffold sequence length (bp) | 1,003 |
| Average scaffold sequence length (bp) | 18,806 |
| Scaffold N50 (bp) | 202,182 |
| Scaffold N90 (bp) | 9,720 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|---|
| Total | 5,140 | 65 | 1 | 1 | 42 | 310 | 5,559 |