- Scientific Name
- Nitrospirae bacterium
- Common Names
- -
- Bioproject
- PRJCA001854
- Biosample
- SAMC112065
- Accession No.
- GWHABDS00000000
- GWH reannotation accession
- GWHRA_ABDS00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Life Sciences and Biotechnology, Shanghai Jiao Tong University
- Contact
- Han Wang, wang1990hk@163.com
- Sequence author(s)
- Han Wang
- Released Date
- 2019-10-28
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- IDBA-UD 1.1.1
- Sequencing & coverage
- Illumina HiSeq X Ten 42.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHABDS00000000 | GWHRA_ABDS00000000.1 | Mar_6844_030 | Draft genome in scaffold level | 2019-10-28 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 2,599,094 |
| GC content | 54.41% |
| Scaffold sequence No. | 151 |
| Maximum scaffold sequence length (bp) | 89,533 |
| Minimum scaffold sequence length (bp) | 2,650 |
| Average scaffold sequence length (bp) | 17,213 |
| Scaffold N50 (bp) | 25,980 |
| Scaffold N90 (bp) | 7,894 |
Statistics of Genome Assembly
| Genome size (bp) | 2,599,094 |
| GC content | 54.41% |
| Scaffold sequence No. | 151 |
| Maximum scaffold sequence length (bp) | 89,533 |
| Minimum scaffold sequence length (bp) | 2,650 |
| Average scaffold sequence length (bp) | 17,213 |
| Scaffold N50 (bp) | 25,980 |
| Scaffold N90 (bp) | 7,894 |
Annotation of Whole Genome Assembly
| Protein | tRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 2,547 | 36 | 1 | 10 | 159 | 2,753 |