Scientific Name
Brassica rapa
Common Names
field mustard;
Bioproject
PRJCA001831
Biosample
SAMC111306
Accession No.
GWHABAA00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
11,856,138 (SNP), 4,322,343 (Indel)
Submitter Organization
Molecular and genetic Lab, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences
Contact
Xiaowu Wang, wangxiaowu@caas.cn
Sequence author(s)
Xiaowu Wang
Released Date
2021-05-12
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
MaSuRCA 3.2.6
Sequencing & coverage
Illumina HiSeq 2500 46.08
PacBio 27.69
Download
DNA GFF RNA Protein
Publication(s)
Xu Cai, et al. Impacts of allopolyploidization and structural variation on intraspecificdiversification in Brassica rapa. Genome Biology. 2021, 22.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHABAA00000000 - PCA Draft genome in chromosome level 2021-05-12 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 367,561,588
GC content 37.07%
Genome sequence No. 2,294
Maximum genome sequence length (bp) 45,207,164
Minimum genome sequence length (bp) 1,623
Average genome sequence length (bp) 160,227
Genome sequence N50 (bp) 29,475,535
Genome sequence N90 (bp) 54,122
Annotation of Whole Genome Assembly
Protein Total
Total 47,411 47,411