- Scientific Name
- Thaumarchaeota
- Common Names
- Nitrososphaeraeota, Nitrososphaerota
- Bioproject
- PRJCA000796
- Biosample
- SAMC026953
- Accession No.
- GWHAAZS00000000
- GWH reannotation accession
- GWHRA_AAZS00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Science Division, Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
- Contact
- Zhaoming Gao, gaozm@idsse.ac.cn
- Sequence author(s)
- Zhaoming Gao, Jiaomei Huang
- Released Date
- 2019-10-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes v3.6.2
- Sequencing & coverage
- Illumina MiSeq 85.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s)
- Zhaoming Gao, et al. In situ meta‐omic insights into the community compositions and ecological roles of hadal microbes in the Mariana Trench. Environmental Microbiology. 2019.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAZS00000000 | GWHRA_AAZS00000000.1 | TS03-MIX-T3 | Draft genome in scaffold level | 2019-10-12 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,256,128 |
| GC content | 33.21% |
| Scaffold sequence No. | 6 |
| Maximum scaffold sequence length (bp) | 751,982 |
| Minimum scaffold sequence length (bp) | 32,041 |
| Average scaffold sequence length (bp) | 209,355 |
| Scaffold N50 (bp) | 751,982 |
| Scaffold N90 (bp) | 137,060 |
Statistics of Genome Assembly
| Genome size (bp) | 1,256,128 |
| GC content | 33.21% |
| Scaffold sequence No. | 6 |
| Maximum scaffold sequence length (bp) | 751,982 |
| Minimum scaffold sequence length (bp) | 32,041 |
| Average scaffold sequence length (bp) | 209,355 |
| Scaffold N50 (bp) | 751,982 |
| Scaffold N90 (bp) | 137,060 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,535 | 43 | 3 | 11 | 8 | 1,600 |