- Scientific Name
- Oxalobacteraceae bacterium IMCC9480
- Common Names
- -
- Bioproject
- PRJCA001827
- Biosample
- SAMC111083
- Accession No.
- GWHAAZP00000000
- GWH reannotation accession
- GWHRA_AAZP00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Oceanography, Shanghai Jiao Tong University
- Contact
- Zhifeng Yang, 1005177545@qq.com
- Sequence author(s)
- Zhifeng Yang
- Released Date
- 2019-10-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- idba_ud v1.1.1
- Sequencing & coverage
- Illumina HiSeq 2000 19.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAZP00000000 | GWHRA_AAZP00000000.1 | Bin2_1 | Draft genome in scaffold level | 2019-10-12 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 3,586,039 |
| GC content | 60.08% |
| Scaffold sequence No. | 301 |
| Maximum scaffold sequence length (bp) | 66,073 |
| Minimum scaffold sequence length (bp) | 1,463 |
| Average scaffold sequence length (bp) | 11,914 |
| Scaffold N50 (bp) | 17,620 |
| Scaffold N90 (bp) | 5,862 |
Statistics of Genome Assembly
| Genome size (bp) | 3,586,039 |
| GC content | 60.08% |
| Scaffold sequence No. | 301 |
| Maximum scaffold sequence length (bp) | 66,073 |
| Minimum scaffold sequence length (bp) | 1,463 |
| Average scaffold sequence length (bp) | 11,914 |
| Scaffold N50 (bp) | 17,620 |
| Scaffold N90 (bp) | 5,862 |
Annotation of Whole Genome Assembly
| Protein | tRNA | ncRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 3,320 | 33 | 1 | 27 | 318 | 3,699 |