- Scientific Name
- Rhodoferax
- Common Names
- Albidiferax, Albidoferax
- Bioproject
- PRJCA001827
- Biosample
- SAMC111088
- Accession No.
- GWHAAZK00000000
- GWH reannotation accession
- GWHRA_AAZK00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- School of Oceanography, Shanghai Jiao Tong University
- Contact
- Zhifeng Yang, 1005177545@qq.com
- Sequence author(s)
- Zhifeng Yang
- Released Date
- 2019-10-12
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- idba_ud v1.1.1
- Sequencing & coverage
- Illumina HiSeq 2000 27.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s) -
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAAZK00000000 | GWHRA_AAZK00000000.1 | Bin2_7 | Draft genome in scaffold level | 2019-10-12 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 4,326,263 |
| GC content | 60.33% |
| Scaffold sequence No. | 188 |
| Maximum scaffold sequence length (bp) | 165,680 |
| Minimum scaffold sequence length (bp) | 1,977 |
| Average scaffold sequence length (bp) | 23,012 |
| Scaffold N50 (bp) | 38,835 |
| Scaffold N90 (bp) | 9,810 |
Statistics of Genome Assembly
| Genome size (bp) | 4,326,263 |
| GC content | 60.33% |
| Scaffold sequence No. | 188 |
| Maximum scaffold sequence length (bp) | 165,680 |
| Minimum scaffold sequence length (bp) | 1,977 |
| Average scaffold sequence length (bp) | 23,012 |
| Scaffold N50 (bp) | 38,835 |
| Scaffold N90 (bp) | 9,810 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 4,032 | 40 | 3 | 82 | 202 | 4,359 |