Scientific Name
Salix brachista
Common Names
-
Bioproject
PRJCA001824
Biosample
SAMC110801
Accession No.
GWHAAZH00000000
GWH reannotation accession
-
GSA raw reads
-
GVM variations of the species
-
Submitter Organization
CAS Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences
Contact
Jiahui Chen, chenjh@mail.kib.ac.cn
Sequence author(s)
Jiahui Chen
Released Date
2019-10-09
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
SMARTdenovo 1.0
CANU 1.3
Sequencing & coverage
PacBio 125.0
Illumina Hiseq X Ten 43.0
Oxford Nanopore Technologies 74.0
Download
DNA GFF RNA Protein
Publication(s)
Jiahui Chen, et al. Genome-wide analysis of Cushion willow provides insights into alpine plant divergence in a biodiversity hotspot. Nature Communications. 2019, 10(1):5230.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAAZH00000000 - Sabra Draft genome in chromosome level 2019-10-09 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 339,587,529
GC content 34.15%
Chromosomes sequence No. 19
Organellas sequence No. 2
Genome sequence No. 30
Maximum genome sequence length (bp) 39,688,537
Minimum genome sequence length (bp) 57,080
Average genome sequence length (bp) 11,319,584
Genome sequence N50 (bp) 17,922,059
Genome sequence N90 (bp) 13,388,179
Annotation of Whole Genome Assembly
Protein tRNA rRNA ncRNA Total
Chromosome 30,050 736 105 649 31,540
Chloroplast 27 26 3 15 71
Mitochondrion 76 20 2 6 104
Others 56 2 8 1 67
Total 30,209 784 118 671 31,782
Annotation Details
ChrID Protein tRNA rRNA ncRNA Total
chr1 1,762 31 0 19 1,812
chr10 1,911 49 0 31 1,991
chr11 1,407 50 12 36 1,505
chr12 1,014 45 0 34 1,093
chr13 1,186 47 25 35 1,293
chr14 1,413 29 0 21 1,463
chr15 1,495 31 0 43 1,569
chr16 3,078 77 0 80 3,235
chr17 1,208 25 2 33 1,268
chr18 1,237 31 0 31 1,299
chr19 1,272 16 66 30 1,384
chr2 1,926 36 0 38 2,000
chr3 1,609 32 0 25 1,666
chr4 1,528 37 0 36 1,601
chr5 1,921 43 0 52 2,016
chr6 2,087 45 0 43 2,175
chr7 1,163 25 0 23 1,211
chr8 1,578 44 0 17 1,639
chr9 1,255 43 0 22 1,320
Chloroplast 27 26 3 15 71
Mitochondrion 76 20 2 6 104
Others 56 2 8 1 67
Total 30,209 784 118 671 31,782