- Scientific Name
- Lonicera japonica
- Common Names
- Japanese honeysuckle;
- Bioproject
- PRJCA001719
- Biosample
- SAMC097356
- Accession No.
- GWHAAZE00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR073322
- GVM variations of the species
- -
- Submitter Organization
- -, Institute of Medicinal Plant Development, Chinese Academy of Medical Sciences
- Contact
- Zhichao Xu, xuzhichao830@126.com
- Sequence author(s)
- Zhichao Xu
- Released Date
- 2020-04-03
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Nuclear )
- Assembly method
- CANU 1.8
- Sequencing & coverage
- Oxford Nanopore 100.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Xiangdong Pu, et al. The honeysuckle genome provides insight into the molecular mechanism of carotenoid metabolism underlying dynamic flower coloration. New Phytologist. 2020.
Statistics of Genome Assembly
| Genome size (bp) | 903,813,177 |
| GC content | 34.11% |
| Chromosomes sequence No. | 9 |
| Genome sequence No. | 145 |
| Maximum genome sequence length (bp) | 125,163,164 |
| Minimum genome sequence length (bp) | 33,408 |
| Average genome sequence length (bp) | 6,233,194 |
| Genome sequence N50 (bp) | 84,431,753 |
| Genome sequence N90 (bp) | 73,664,317 |
Annotation of Whole Genome Assembly
| Protein | Pseudogene | Total | |
|---|---|---|---|
| Chromosome | 32,265 | 18 | 32,283 |
| Others | 1,696 | 0 | 1,696 |
| Total | 33,961 | 18 | 33,979 |
Annotation Details
| ChrID | Protein | Pseudogene | Total |
|---|---|---|---|
| chr1 | 4,958 | 3 | 4,961 |
| chr2 | 5,263 | 3 | 5,266 |
| chr3 | 3,556 | 1 | 3,557 |
| chr4 | 3,379 | 3 | 3,382 |
| chr5 | 3,179 | 1 | 3,180 |
| chr6 | 2,807 | 3 | 2,810 |
| chr7 | 3,096 | 2 | 3,098 |
| chr8 | 2,743 | 0 | 2,743 |
| chr9 | 3,284 | 2 | 3,286 |
| Others | 1,696 | 0 | 1,696 |
| Total | 33,961 | 18 | 33,979 |