- Scientific Name
- Ananas bracteatus
- Common Names
- red pineapple, wild pineapple; Ananas bracteatus, Ananas bracteatus var. bracteatus, Ananas fritzmuelleri, Ananas sagenaria
- Bioproject
- PRJCA001155
- Biosample
- SAMC070535
- Accession No.
- GWHAAFI00000000.1
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Haixia Institute of Science and Technology, Fujian Agriculture and Forestry University
- Contact
- yu Chen Li, lychen@fafu.edu.cn
- Sequence author(s)
- yu Chen Li, Ray Ming, Xingtan Zhang
- Released Date
- 2019-06-13
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Partial Genome ( Mitochondrion , Chloroplast )
- Assembly method
- Newbler unpublished
Anytag unpublished - Sequencing & coverage
- PacBio 58.0
Illumina HiSeq *10 100.0 - Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Liyu Chen, et al. The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics. 2019, 51:1549–1558.
Statistics of Genome Assembly
| Genome size (bp) | 315,839,004 |
| GC content | 37.72% |
| Chromosomes sequence No. | 25 |
Annotation of Whole Genome Assembly
| Protein | Others | Total | |
|---|---|---|---|
| Chromosome | 26,726 | 3 | 26,729 |
| Total | 26,726 | 3 | 26,729 |
Annotation Details
| ChrID | Protein | Others | Total |
|---|---|---|---|
| chr1 | 805 | 0 | 805 |
| chr10 | 1,260 | 0 | 1,260 |
| chr11 | 1,003 | 0 | 1,003 |
| chr12 | 1,023 | 0 | 1,023 |
| chr13 | 1,149 | 0 | 1,149 |
| chr14 | 904 | 0 | 904 |
| chr15 | 1,013 | 0 | 1,013 |
| chr16 | 992 | 0 | 992 |
| chr17 | 850 | 0 | 850 |
| chr18 | 960 | 0 | 960 |
| chr19 | 944 | 0 | 944 |
| chr2 | 1,229 | 0 | 1,229 |
| chr20 | 853 | 0 | 853 |
| chr21 | 895 | 0 | 895 |
| chr22 | 885 | 0 | 885 |
| chr23 | 878 | 0 | 878 |
| chr24 | 711 | 0 | 711 |
| chr25 | 978 | 0 | 978 |
| chr3 | 1,354 | 0 | 1,354 |
| chr4 | 1,437 | 0 | 1,437 |
| chr5 | 1,500 | 0 | 1,500 |
| chr6 | 1,361 | 0 | 1,361 |
| chr7 | 1,183 | 2 | 1,185 |
| chr8 | 1,317 | 1 | 1,318 |
| chr9 | 1,242 | 0 | 1,242 |
| Total | 26,726 | 3 | 26,729 |