- Scientific Name
- Alphaproteobacteria
- Common Names
- Alphabacteria, alpha proteobacteria, alpha subdivision, alpha subgroup, Proteobacteria alpha subdivision, Purple bacteria, alpha subdivision
- Bioproject
- PRJCA000796
- Biosample
- SAMC026978
- Accession No.
- GWHAACE00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Science, Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
- Contact
- Zhaoming Gao, gaozm@idsse.ac.cn
- Sequence author(s)
- Zhaoming Gao, Jiaomei Huang
- Released Date
- 2019-10-10
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes v3.6.2
- Sequencing & coverage
- MiSeq 37.0
- Download
-
DNA
- Publication(s)
- Zhaoming Gao, et al. In situ meta‐omic insights into the community compositions and ecological roles of hadal microbes in the Mariana Trench. Environmental Microbiology. 2019.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAACE00000000 | - | TS03-MIX-P28 | Draft genome in scaffold level | 2019-10-10 |
DNA
|
Statistics of Genome Assembly
| Genome size (bp) | 1,627,543 |
| GC content | 31.68% |
| Scaffold sequence No. | 79 |
| Maximum scaffold sequence length (bp) | 121,072 |
| Minimum scaffold sequence length (bp) | 2,062 |
| Average scaffold sequence length (bp) | 20,602 |
| Scaffold N50 (bp) | 46,033 |
| Scaffold N90 (bp) | 8,295 |