Scientific Name
Coix lacryma-jobi
Common Names
Job's tears; Coix lachryma-jobi, Coix lacryma
Bioproject
PRJCA001469
Biosample
SAMC070698
Accession No.
GWHAAYR00000000
GWH reannotation accession
-
GSA raw reads
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GVM variations of the species
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Submitter Organization
College of Agronomy and Biotechnology, China Agricultural University
Contact
Hongbing Liu, hbliu@cau.edu.cn
Sequence author(s)
Hongbing Liu, Junpeng Shi, Zexi Cai, Yumin Huang
Released Date
2019-06-04
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
HERA 2018
Sequencing & coverage
PacBio 66.0
Illumina HiSeq 2000 172.6
Download
DNA GFF RNA Protein
Publication(s)
Yangguang Hua, et al. Genome-wide analysis of the HSP20 gene family and its response to heat anddrought stress in Coix (Coix lacryma-jobi L.). BMC Genomics. 2023, 24.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAAYR00000000 - BJ Coix v1 Draft genome in chromosome level 2019-06-04 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 1,731,458,735
GC content 46.68%
Chromosomes sequence No. 10
Genome sequence No. 1,233
Maximum genome sequence length (bp) 190,792,110
Minimum genome sequence length (bp) 649
Average genome sequence length (bp) 1,404,265
Genome sequence N50 (bp) 161,246,920
Genome sequence N90 (bp) 135,077,776
Annotation of Whole Genome Assembly
Protein Pseudogene Others Total
Chromosome 66,804 27,642 218 94,664
Others 4,633 1,861 18 6,512
Total 71,437 29,503 236 101,176
Annotation Details
ChrID Protein Pseudogene Others Total
chr1 8,039 3,594 27 11,660
chr10 4,425 1,461 3 5,889
chr2 10,310 4,434 42 14,786
chr3 5,952 2,519 19 8,490
chr4 9,542 4,240 42 13,824
chr5 4,834 1,989 11 6,834
chr6 8,076 3,349 31 11,456
chr7 5,039 1,888 17 6,944
chr8 4,638 1,705 11 6,354
chr9 5,949 2,463 15 8,427
Others 4,633 1,861 18 6,512
Total 71,437 29,503 236 101,176