Scientific Name
Larimichthys crocea
Common Names
croceine croaker; large yellow croaker; Pseudosciaena amblyceps, Pseudosciaena crocea, Sciaena crocea
Bioproject
PRJCA001425
Biosample
SAMC069952
Accession No.
GWHAATE00000000
GWH reannotation accession
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GSA raw reads
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GVM variations of the species
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Submitter Organization
State Key Laboratory of Large Yellow Croaker Breeding, Ningde Fufa Fisheries Co., Ltd
Contact
Peng Xu, xupeng77@gmail.com
Sequence author(s)
Peng Xu, Baohua Chen, Qiaozhen Ke, Yidi Wu, Huaqiang Bai, Fei Pu
Released Date
2019-05-20
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
FALCON 1.8.2
Sequencing & coverage
PacBio 113.78
Illumina HiSeq 2500 148.54
Hi-C 168.18
Download
DNA GFF RNA Protein
Publication(s)
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Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAATE00000000 - LCFGL_pacHiC_1.0 Draft genome in chromosome level 2019-05-20 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 721,257,125
GC content 41.40%
Chromosomes sequence No. 24
Genome sequence No. 1,053
Maximum genome sequence length (bp) 34,893,774
Minimum genome sequence length (bp) 201
Average genome sequence length (bp) 684,955
Genome sequence N50 (bp) 27,849,869
Genome sequence N90 (bp) 20,012,134
Annotation of Whole Genome Assembly
Protein Total
Chromosome 22,160 22,160
Others 995 995
Total 23,155 23,155
Annotation Details
ChrID Protein Total
chr1 1,247 1,247
chr10 947 947
chr11 943 943
chr12 847 847
chr13 466 466
chr14 1,120 1,120
chr15 1,037 1,037
chr16 454 454
chr17 924 924
chr18 954 954
chr19 899 899
chr2 933 933
chr20 1,086 1,086
chr21 842 842
chr22 1,036 1,036
chr23 611 611
chr24 663 663
chr3 924 924
chr4 1,022 1,022
chr5 1,117 1,117
chr6 881 881
chr7 843 843
chr8 1,311 1,311
chr9 1,053 1,053
Others 995 995
Total 23,155 23,155