- Scientific Name
- Cyprinus carpio carpio
- Common Names
- -
- Bioproject
- PRJCA001408
- Biosample
- SAMC069719
- Accession No.
- GWHAATC00000000
- GWH reannotation accession
- -
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- COLLEGE OF OCEAN & EARTH SCIENCES, Xiamen University
- Contact
- Peng Xu, xupeng77@xmu.edu.cn
- Sequence author(s)
- Peng Xu
- Released Date
- 2019-05-09
- Assembly Level
- Draft genome in chromosome level
- Genome Representation
- Full Genome
- Assembly method
- SOAPdenovo MAY-2017
- Sequencing & coverage
- Illumina HiSeq 430.5
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Peng Xu, et al. The allotetraploid origin and asymmetrical genome evolution of the common carp Cyprinus carpio. Nature Communications. 2019, 10(1):4625.
Statistics of Genome Assembly
| Genome size (bp) | 1,416,103,994 |
| GC content | 36.96% |
| Genome sequence No. | 17,709 |
| Maximum genome sequence length (bp) | 38,647,772 |
| Minimum genome sequence length (bp) | 700 |
| Average genome sequence length (bp) | 79,965 |
| Genome sequence N50 (bp) | 25,614,274 |
| Genome sequence N90 (bp) | 18,121,008 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 44,758 | 44,758 |