Scientific Name
Fusarium oxysporum f. cubense
Common Names
Fusarium cubense, Fusarium oxysporum f. cubense, Fusarium oxysporum var. cubense
Bioproject
PRJCA001282
Biosample
SAMC064005
Accession No.
GWHAASU00000000
GWH reannotation accession
-
GSA raw reads
CRR049239
GVM variations of the species
-
Submitter Organization
State Key Laboratory of Ecological Pest Control for Fujian and Taiwan Crops, Fujian Agriculture and Forestry University
Contact
Yingzi Yun, yingziyun@fafu.edu.cn
Sequence author(s)
Yingzi Yun, Aixia Song, Zonghua Wang, Liangsheng Zhang
Released Date
2019-04-28
Assembly Level
Draft genome in chromosome level
Genome Representation
Full Genome
Assembly method
canu v1.5
Sequencing & coverage
PacBio 145.0
Download
DNA GFF RNA Protein
Publication(s)
Yingzi Yun, et al. Genome data of Fusarium oxysporum f. sp. cubense race 1 and tropical race 4 isolates using long-read sequencing. IS-MPMI. 2019, 32(10):1270-1272.
Assembly Accession GWH Reannotation Accession Assembly Name Assembly Level Released Date Download Files
GWHAASU00000000 - FocTR4 58 Draft genome in chromosome level 2019-04-28 DNA GFF RNA Protein

Statistics of Genome Assembly

Genome size (bp) 48,387,182
GC content 47.47%
Genome sequence No. 24
Maximum genome sequence length (bp) 6,708,354
Minimum genome sequence length (bp) 14,589
Average genome sequence length (bp) 2,016,133
Genome sequence N50 (bp) 4,400,610
Genome sequence N90 (bp) 2,761,144
Annotation of Whole Genome Assembly
Protein Others Total
Total 15,519 11,978 27,497