- Scientific Name
- Thaumarchaeota
- Common Names
- Nitrososphaeraeota, Nitrososphaerota
- Bioproject
- PRJCA000762
- Biosample
- SAMC021086
- Accession No.
- GWHAABI00000000
- GWH reannotation accession
- GWHRA_AABI00000000.1
- GSA raw reads
- -
- GVM variations of the species
- -
- Submitter Organization
- Science, Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences
- Contact
- Yong Wang, wangy@idsse.ac.cn
- Sequence author(s)
- Yong Wang, Jiaomei Huang
- Released Date
- 2019-01-09
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- SPAdes v.3.6.2
- Sequencing & coverage
- MiSeq 18.0
- Download
-
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein - Publication(s)
- Yong Wang, et al. Genomics insights into ecotype formation of ammonia‐oxidizing archaea in the deep ocean. Environmental Microbiology. 2019, 21(2):716-729.
| Assembly Accession | GWH Reannotation Accession | Assembly Name | Assembly Level | Released Date | Download Files |
|---|---|---|---|---|---|
| GWHAABI00000000 | GWHRA_AABI00000000.1 | Alpha_AOA_ma1 | Draft genome in scaffold level | 2019-01-09 |
DNA
Reannotation DNA Reannotation GFF Reannotation RNA Reannotation Protein |
Statistics of Genome Assembly
| Genome size (bp) | 1,273,336 |
| GC content | 33.18% |
| Scaffold sequence No. | 21 |
| Maximum scaffold sequence length (bp) | 198,497 |
| Minimum scaffold sequence length (bp) | 2,140 |
| Average scaffold sequence length (bp) | 60,635 |
| Scaffold N50 (bp) | 92,468 |
| Scaffold N90 (bp) | 33,972 |
Statistics of Genome Assembly
| Genome size (bp) | 1,273,336 |
| GC content | 33.18% |
| Scaffold sequence No. | 21 |
| Maximum scaffold sequence length (bp) | 198,497 |
| Minimum scaffold sequence length (bp) | 2,140 |
| Average scaffold sequence length (bp) | 60,635 |
| Scaffold N50 (bp) | 92,468 |
| Scaffold N90 (bp) | 33,972 |
Annotation of Whole Genome Assembly
| Protein | tRNA | rRNA | Pseudogene | Others | Total | |
|---|---|---|---|---|---|---|
| Total | 1,553 | 40 | 3 | 12 | 23 | 1,631 |