- Scientific Name
- Oryza granulata
- Common Names
- Oryza granulata
- Bioproject
- PRJCA001328
- Biosample
- SAMC064000
- Accession No.
- GWHAAKB00000000
- GWH reannotation accession
- -
- GSA raw reads
- CRR049780
- GVM variations of the species
- -
- Submitter Organization
- College of Agriculture, South China Agricultural University
- Contact
- Wei Li, 1430997682@qq.com
- Sequence author(s)
- Wei Li
- Released Date
- 2019-03-19
- Assembly Level
- Draft genome in scaffold level
- Genome Representation
- Full Genome
- Assembly method
- AllPaths version 52488
- Sequencing & coverage
- Illumina HiSeq 2000 168.0
- Download
-
DNA
GFF
RNA
Protein
- Publication(s)
- Cong Shi, et al. The draft genome sequence of an upland wild rice species, Oryza granulata. Scientific Data. 2020, 7(1):131.
Statistics of Genome Assembly
| Genome size (bp) | 736,660,308 |
| GC content | 45.87% |
| Scaffold sequence No. | 2,393 |
| Maximum scaffold sequence length (bp) | 4,040,447 |
| Minimum scaffold sequence length (bp) | 952 |
| Average scaffold sequence length (bp) | 307,840 |
| Scaffold N50 (bp) | 916,335 |
| Scaffold N90 (bp) | 239,778 |
Annotation of Whole Genome Assembly
| Protein | Total | |
|---|---|---|
| Total | 49,486 | 49,486 |